biovizBase 1.21.0
Michael Lawrence
| Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/biovizBase | | Last Changed Rev: 117081 / Revision: 121152 | | Last Changed Date: 2016-05-03 14:30:44 -0700 (Tue, 03 May 2016) |
| zin1 | Linux (Ubuntu 16.04 LTS) / x86_64 | [ OK ] | OK | ERROR | | |
| moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | OK | OK | ERROR | OK | |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | ERROR | OK | |
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### Running command:
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### /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD INSTALL biovizBase
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* installing to library ‘/home/biocbuild/bbs-3.4-bioc/R/library’
* installing *source* package ‘biovizBase’ ...
** libs
gcc -I/home/biocbuild/bbs-3.4-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c R_init_biovizBase.c -o R_init_biovizBase.o
gcc -I/home/biocbuild/bbs-3.4-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c bin_offsets.c -o bin_offsets.o
In file included from /usr/include/string.h:630:0,
from /home/biocbuild/bbs-3.4-bioc/R/include/R_ext/RS.h:31,
from /home/biocbuild/bbs-3.4-bioc/R/include/Rdefines.h:33,
from bin_offsets.h:1,
from bin_offsets.c:3:
bin_offsets.c: In function ‘scan_bam_bin_offsets’:
bin_offsets.c:57:15: warning: pointer targets in passing argument 1 of ‘strlen’ differ in signedness [-Wpointer-sign]
if (strncmp(b, "BAI\1", 4))
^
In file included from /home/biocbuild/bbs-3.4-bioc/R/include/R_ext/RS.h:31:0,
from /home/biocbuild/bbs-3.4-bioc/R/include/Rdefines.h:33,
from bin_offsets.h:1,
from bin_offsets.c:3:
/usr/include/string.h:394:15: note: expected ‘const char *’ but argument is of type ‘Rbyte * {aka unsigned char *}’
extern size_t strlen (const char *__s)
^
In file included from /usr/include/string.h:630:0,
from /home/biocbuild/bbs-3.4-bioc/R/include/R_ext/RS.h:31,
from /home/biocbuild/bbs-3.4-bioc/R/include/Rdefines.h:33,
from bin_offsets.h:1,
from bin_offsets.c:3:
bin_offsets.c:57:15: warning: pointer targets in passing argument 1 of ‘__builtin_strlen’ differ in signedness [-Wpointer-sign]
if (strncmp(b, "BAI\1", 4))
^
bin_offsets.c:57:15: note: expected ‘const char *’ but argument is of type ‘Rbyte * {aka unsigned char *}’
bin_offsets.c:57:15: warning: pointer targets in passing argument 1 of ‘__builtin_strcmp’ differ in signedness [-Wpointer-sign]
if (strncmp(b, "BAI\1", 4))
^
bin_offsets.c:57:15: note: expected ‘const char *’ but argument is of type ‘Rbyte * {aka unsigned char *}’
bin_offsets.c:57:15: warning: pointer targets in passing argument 1 of ‘__builtin_strlen’ differ in signedness [-Wpointer-sign]
if (strncmp(b, "BAI\1", 4))
^
bin_offsets.c:57:15: note: expected ‘const char *’ but argument is of type ‘Rbyte * {aka unsigned char *}’
bin_offsets.c:57:15: warning: pointer targets in passing argument 1 of ‘__builtin_strcmp’ differ in signedness [-Wpointer-sign]
if (strncmp(b, "BAI\1", 4))
^
bin_offsets.c:57:15: note: expected ‘const char *’ but argument is of type ‘Rbyte * {aka unsigned char *}’
bin_offsets.c:57:15: warning: pointer targets in passing argument 1 of ‘__builtin_strcmp’ differ in signedness [-Wpointer-sign]
if (strncmp(b, "BAI\1", 4))
^
bin_offsets.c:57:15: note: expected ‘const char *’ but argument is of type ‘Rbyte * {aka unsigned char *}’
bin_offsets.c:57:15: warning: pointer targets in passing argument 1 of ‘__builtin_strcmp’ differ in signedness [-Wpointer-sign]
if (strncmp(b, "BAI\1", 4))
^
bin_offsets.c:57:15: note: expected ‘const char *’ but argument is of type ‘Rbyte * {aka unsigned char *}’
bin_offsets.c:57:15: warning: pointer targets in passing argument 1 of ‘strncmp’ differ in signedness [-Wpointer-sign]
if (strncmp(b, "BAI\1", 4))
^
In file included from /home/biocbuild/bbs-3.4-bioc/R/include/R_ext/RS.h:31:0,
from /home/biocbuild/bbs-3.4-bioc/R/include/Rdefines.h:33,
from bin_offsets.h:1,
from bin_offsets.c:3:
/usr/include/string.h:143:12: note: expected ‘const char *’ but argument is of type ‘Rbyte * {aka unsigned char *}’
extern int strncmp (const char *__s1, const char *__s2, size_t __n)
^
gcc -shared -L/home/biocbuild/bbs-3.4-bioc/R/lib -L/usr/local/lib -o biovizBase.so R_init_biovizBase.o bin_offsets.o -L/home/biocbuild/bbs-3.4-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.4-bioc/R/library/biovizBase/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (biovizBase)