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BioC 3.4: CHECK report for crossmeta on moscato1

This page was generated on 2016-09-21 03:48:33 -0700 (Wed, 21 Sep 2016).

Package 273/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
crossmeta 0.99.12
Alex Pickering
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/crossmeta
Last Changed Rev: 120684 / Revision: 121152
Last Changed Date: 2016-09-02 07:28:53 -0700 (Fri, 02 Sep 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: crossmeta
Version: 0.99.12
Command: rm -rf crossmeta.buildbin-libdir crossmeta.Rcheck && mkdir crossmeta.buildbin-libdir crossmeta.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=crossmeta.buildbin-libdir crossmeta_0.99.12.tar.gz >crossmeta.Rcheck\00install.out 2>&1 && cp crossmeta.Rcheck\00install.out crossmeta-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=crossmeta.buildbin-libdir --install="check:crossmeta-install.out" --force-multiarch --no-vignettes --timings crossmeta_0.99.12.tar.gz
StartedAt: 2016-09-20 06:38:39 -0700 (Tue, 20 Sep 2016)
EndedAt: 2016-09-20 06:43:01 -0700 (Tue, 20 Sep 2016)
EllapsedTime: 261.9 seconds
RetCode: 0
Status:  OK  
CheckDir: crossmeta.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf crossmeta.buildbin-libdir crossmeta.Rcheck && mkdir crossmeta.buildbin-libdir crossmeta.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=crossmeta.buildbin-libdir crossmeta_0.99.12.tar.gz >crossmeta.Rcheck\00install.out 2>&1 && cp crossmeta.Rcheck\00install.out crossmeta-install.out  && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=crossmeta.buildbin-libdir --install="check:crossmeta-install.out" --force-multiarch --no-vignettes --timings crossmeta_0.99.12.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.4-bioc/meat/crossmeta.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'crossmeta/DESCRIPTION' ... OK
* this is package 'crossmeta' version '0.99.12'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'crossmeta' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
            user system elapsed
setup_prev 46.09   0.08   47.67
diff_expr  30.15   0.23   30.52
get_raw     0.25   0.03    6.05
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
            user system elapsed
setup_prev 53.63   0.01   53.64
diff_expr  34.07   0.14   34.62
get_raw     0.08   0.02    5.14
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking PDF version of manual ... OK
* DONE

Status: OK

crossmeta.Rcheck/00install.out:


install for i386

* installing *source* package 'crossmeta' ...
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'crossmeta' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'crossmeta' as crossmeta_0.99.12.zip
* DONE (crossmeta)

crossmeta.Rcheck/examples_i386/crossmeta-Ex.timings:

nameusersystemelapsed
contribute0.780.010.80
diff_expr30.15 0.2330.52
es_meta2.060.032.10
get_raw0.250.036.05
load_diff0.170.000.17
load_raw0.250.000.25
open_raw_illum0.010.000.02
setup_prev46.09 0.0847.67
symbol_annot2.180.052.23

crossmeta.Rcheck/examples_x64/crossmeta-Ex.timings:

nameusersystemelapsed
contribute0.780.000.78
diff_expr34.07 0.1434.62
es_meta2.190.002.19
get_raw0.080.025.14
load_diff0.250.000.25
load_raw0.260.000.26
open_raw_illum0.020.000.02
setup_prev53.63 0.0153.64
symbol_annot2.070.082.16