BioC 3.4: CHECK report for flowQB on malbec1

Package: flowQB

Version: 2.2.0

Command: /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings flowQB_2.2.0.tar.gz

StartedAt: 2017-04-14 22:33:12 -0400 (Fri, 14 Apr 2017)

EndedAt: 2017-04-14 22:44:48 -0400 (Fri, 14 Apr 2017)

EllapsedTime: 695.2 seconds

RetCode: 0

Status:  OK

CheckDir: flowQB.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings flowQB_2.2.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.4-bioc/meat/flowQB.Rcheck’
* using R version 3.3.3 (2017-03-06)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘flowQB/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘flowQB’ version ‘2.2.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘flowQB’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                            user system elapsed
fit_beads                275.940  1.352 277.068
fit_led                   10.820  0.344  11.313
calc_mean_sd_197          10.248  0.528  10.145
qb_from_fits              10.124  0.268  10.420
calc_mean_sd_capture_all   7.728  0.320   7.827
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

* installing *source* package ‘flowQB’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (flowQB)

name	user	system	elapsed
calc_mean_sd_197	10.248	0.528	10.145
calc_mean_sd_background	2.932	0.056	2.257
calc_mean_sd_capture	0.480	0.024	0.504
calc_mean_sd_capture_all	7.728	0.320	7.827
calc_mean_sd_duke	4.272	0.220	4.026
find_peak	0.004	0.000	0.006
fit_beads	275.940	1.352	277.068
fit_led	10.820	0.344	11.313
fitted_ellipse_gate	1.412	0.140	1.548
get_results_for_dyes	3.632	0.244	3.716
peak_gate-methods	1.192	0.084	1.272
pick_parameters-methods	0.272	0.004	0.275
qb_from_fits	10.124	0.268	10.420
split_in_two-methods	0.612	0.040	0.648