BioC 3.4: CHECK report for flowQB on moscato1

Package: flowQB

Version: 2.1.2

Command: rm -rf flowQB.buildbin-libdir flowQB.Rcheck && mkdir flowQB.buildbin-libdir flowQB.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=flowQB.buildbin-libdir flowQB_2.1.2.tar.gz >flowQB.Rcheck\00install.out 2>&1 && cp flowQB.Rcheck\00install.out flowQB-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=flowQB.buildbin-libdir --install="check:flowQB-install.out" --force-multiarch --no-vignettes --timings flowQB_2.1.2.tar.gz

StartedAt: 2016-09-20 08:22:46 -0700 (Tue, 20 Sep 2016)

EndedAt: 2016-09-20 08:50:15 -0700 (Tue, 20 Sep 2016)

EllapsedTime: 1649.5 seconds

RetCode: 0

Status:  OK

CheckDir: flowQB.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf flowQB.buildbin-libdir flowQB.Rcheck && mkdir flowQB.buildbin-libdir flowQB.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=flowQB.buildbin-libdir flowQB_2.1.2.tar.gz >flowQB.Rcheck\00install.out 2>&1 && cp flowQB.Rcheck\00install.out flowQB-install.out  && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=flowQB.buildbin-libdir --install="check:flowQB-install.out" --force-multiarch --no-vignettes --timings flowQB_2.1.2.tar.gz
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* using log directory 'D:/biocbld/bbs-3.4-bioc/meat/flowQB.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'flowQB/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowQB' version '2.1.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'flowQB' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                           user system elapsed
fit_beads                334.71   6.18  345.84
fit_led                   15.37   0.17   29.73
qb_from_fits              13.96   0.07   14.05
calc_mean_sd_197          10.28   0.29   16.71
calc_mean_sd_capture_all   8.19   0.17   11.96
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                           user system elapsed
fit_beads                347.12   6.82  353.79
fit_led                   14.74   0.16   14.75
qb_from_fits              13.91   0.22   14.13
calc_mean_sd_197          11.66   0.14   11.42
calc_mean_sd_capture_all   8.77   0.14    8.73
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'flowQB' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'flowQB' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowQB' as flowQB_2.1.2.zip
* DONE (flowQB)

name	user	system	elapsed
calc_mean_sd_197	10.28	0.29	16.71
calc_mean_sd_background	2.04	0.03	2.46
calc_mean_sd_capture	0.72	0.02	1.49
calc_mean_sd_capture_all	8.19	0.17	11.96
calc_mean_sd_duke	4.21	0.03	4.70
find_peak	0.02	0.00	0.01
fit_beads	334.71	6.18	345.84
fit_led	15.37	0.17	29.73
fitted_ellipse_gate	1.48	0.08	1.56
get_results_for_dyes	3.61	0.03	3.62
peak_gate-methods	1.73	0.03	1.77
pick_parameters-methods	0.97	0.03	1.00
qb_from_fits	13.96	0.07	14.05
split_in_two-methods	0.96	0.04	1.02

name	user	system	elapsed
calc_mean_sd_197	11.66	0.14	11.42
calc_mean_sd_background	2.83	0.00	2.39
calc_mean_sd_capture	0.56	0.01	0.58
calc_mean_sd_capture_all	8.77	0.14	8.73
calc_mean_sd_duke	4.49	0.00	4.17
find_peak	0	0	0
fit_beads	347.12	6.82	353.79
fit_led	14.74	0.16	14.75
fitted_ellipse_gate	1.47	0.01	1.50
get_results_for_dyes	4.28	0.00	4.16
peak_gate-methods	1.87	0.03	1.90
pick_parameters-methods	0.53	0.03	0.57
qb_from_fits	13.91	0.22	14.13
split_in_two-methods	0.89	0.00	0.89