BioC 3.4: BUILD BIN report for limmaGUI on moscato1

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### Running command:
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###   cd limmaGUI.buildbin-libdir/limmaGUI && zip -r ../../limmaGUI_1.49.0.zip . & cd ../..
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  adding: CITATION (188 bytes security) (deflated 48%)
  adding: DESCRIPTION (188 bytes security) (deflated 41%)
  adding: doc/ (208 bytes security) (stored 0%)
  adding: doc/about.html (188 bytes security) (deflated 51%)
  adding: doc/about_files/ (208 bytes security) (stored 0%)
  adding: doc/about_files/BioinfBanner.jpg (188 bytes security) (deflated 0%)
  adding: doc/about_files/Mutant11vsMutant21ScatterPlot.jpg (188 bytes security) (deflated 21%)
  adding: doc/about_files/SwirlToptable.jpg (188 bytes security) (deflated 26%)
  adding: doc/about_files/WeaverMtMMPlotSelected.jpg (188 bytes security) (deflated 20%)
  adding: doc/about_files/wehilogo.gif (188 bytes security) (deflated 1%)
  adding: doc/ApoAI/ (208 bytes security) (stored 0%)
  adding: doc/ApoAI/ApoAILinearModelComputed.jpg (188 bytes security) (deflated 18%)
  adding: doc/ApoAI/ApoAIScaleBoxPlot.jpg (188 bytes security) (deflated 19%)
  adding: doc/ApoAI/ApoAITargets.jpg (188 bytes security) (deflated 9%)
  adding: doc/ApoAI/AvgMAPlotFittedMValues.jpg (188 bytes security) (deflated 17%)
  adding: doc/ApoAI/ChooseNormalizationMethod.jpg (188 bytes security) (deflated 11%)
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  adding: doc/ApoAI/ContrastsComputed.jpg (188 bytes security) (deflated 24%)
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  adding: doc/ApoAI/ContrastsParameterizationName.jpg (188 bytes security) (deflated 9%)
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  adding: doc/ApoAI/DEGeneLabelsOptions.jpg (188 bytes security) (deflated 11%)
  adding: doc/ApoAI/index.html (188 bytes security) (deflated 69%)
  adding: doc/ApoAI/limmaGUImainWindow.jpg (188 bytes security) (deflated 31%)
  adding: doc/ApoAI/LogOddsPlot.jpg (188 bytes security) (deflated 25%)
  adding: doc/ApoAI/LogOddsPlotSelected.jpg (188 bytes security) (deflated 14%)
  adding: doc/ApoAI/MainWindowApoAILimmaFileLoaded.jpg (188 bytes security) (deflated 22%)
  adding: doc/ApoAI/MBoxPlotSelected.jpg (188 bytes security) (deflated 17%)
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  adding: doc/ApoAI/NumDEGeneLabels.jpg (188 bytes security) (deflated 10%)
  adding: doc/ApoAI/OpeningLimmaFile.jpg (188 bytes security) (deflated 17%)
  adding: doc/ApoAI/OpenSelected.jpg (188 bytes security) (deflated 26%)
  adding: doc/ApoAI/ParameterizationName.jpg (188 bytes security) (deflated 8%)
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  adding: doc/ApoAI/PlotBoxPlotBySlide.jpg (188 bytes security) (deflated 8%)
  adding: doc/ApoAI/SaveAsSelected.jpg (188 bytes security) (deflated 15%)
  adding: doc/ApoAI/SavingApoAILimmaFile.jpg (188 bytes security) (deflated 21%)
  adding: doc/ApoAI/SpotsIncludedInLinearModel.jpg (188 bytes security) (deflated 13%)
  adding: doc/ApoAI/Toptable.jpg (188 bytes security) (deflated 24%)
  adding: doc/ApoAI/ToptableContrast.jpg (188 bytes security) (deflated 22%)
  adding: doc/ApoAI/ToptableOptions.jpg (188 bytes security) (deflated 16%)
  adding: doc/ApoAI/ToptableSelected.jpg (188 bytes security) (deflated 15%)
  adding: doc/Bob/ (208 bytes security) (stored 0%)
  adding: doc/Bob/BobLimmaLoaded.jpg (188 bytes security) (deflated 19%)
  adding: doc/Bob/CalculateDupCor.jpg (188 bytes security) (deflated 11%)
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  adding: doc/Bob/LinearModelComputed.jpg (188 bytes security) (deflated 19%)
  adding: doc/Bob/LogOddsPlot.jpg (188 bytes security) (deflated 20%)
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  adding: doc/Bob/OpeningBobLimma.jpg (188 bytes security) (deflated 20%)
  adding: doc/Bob/OpenSelected.jpg (188 bytes security) (deflated 26%)
  adding: doc/Bob/ParameterDropDowns.jpg (188 bytes security) (deflated 16%)
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  adding: doc/Bob/SaveAsSelected.jpg (188 bytes security) (deflated 18%)
  adding: doc/Bob/SavingBobLinearModelComputed.jpg (188 bytes security) (deflated 20%)
  adding: doc/Bob/SpotsIncludedInLinearModel.jpg (188 bytes security) (deflated 13%)
  adding: doc/Bob/Toptable.jpg (188 bytes security) (deflated 31%)
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  adding: doc/import/ (208 bytes security) (stored 0%)
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  adding: doc/import/OpeningMFile.png (188 bytes security) (deflated 2%)
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  adding: doc/input/ (208 bytes security) (stored 0%)
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  adding: doc/input/ApoAITargetsInExcel.png (188 bytes security) (deflated 6%)
  adding: doc/input/ImaGeneTargetsFile.png (188 bytes security) (deflated 2%)
  adding: doc/input/ScorecardSpotTypesInExcel.png (188 bytes security) (deflated 2%)
  adding: doc/input/ScorecardsTargetsInExcel.png (188 bytes security) (deflated 3%)
  adding: doc/input/SwirlSampleInExcel.png (188 bytes security) (deflated 1%)
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  adding: doc/lgDevel.html (188 bytes security) (deflated 68%)
  adding: doc/limmaGUI.pdf (188 bytes security) (deflated 5%)
  adding: doc/limmaGUI.R (188 bytes security) (deflated 70%)
  adding: doc/limmaGUI.Rnw (188 bytes security) (deflated 50%)
  adding: doc/LinModIntro.pdf (188 bytes security) (deflated 5%)
  adding: doc/LinModIntro.tex (188 bytes security) (deflated 57%)
  adding: doc/style.css (188 bytes security) (deflated 42%)
  adding: doc/Swirl/ (208 bytes security) (stored 0%)
  adding: doc/Swirl/ChooseNormalizationMethod.jpg (188 bytes security) (deflated 11%)
  adding: doc/Swirl/ChooseParameter.jpg (188 bytes security) (deflated 18%)
  adding: doc/Swirl/ChooseParameterizationDialog.jpg (188 bytes security) (deflated 14%)
  adding: doc/Swirl/ChooseSwirlWorkingDir.jpg (188 bytes security) (deflated 19%)
  adding: doc/Swirl/ComputeLinearModelFitSelected.jpg (188 bytes security) (deflated 21%)
  adding: doc/Swirl/CreateNewParameterization.jpg (188 bytes security) (deflated 8%)
  adding: doc/Swirl/DataSetNameSwirl.jpg (188 bytes security) (deflated 11%)
  adding: doc/Swirl/DEGeneLabelsOptions.jpg (188 bytes security) (deflated 11%)
  adding: doc/Swirl/EvalRCodeGALexample.jpg (188 bytes security) (deflated 46%)
  adding: doc/Swirl/EvaluateRCodeSelected.jpg (188 bytes security) (deflated 17%)
  adding: doc/Swirl/ExportHTMLReportSelected.jpg (188 bytes security) (deflated 18%)
  adding: doc/Swirl/FileSaveAsSelected.jpg (188 bytes security) (deflated 17%)
  adding: doc/Swirl/galEvalRCodeResults.jpg (188 bytes security) (deflated 57%)
  adding: doc/Swirl/GALTargetsandSpotTypesFilesSelected.jpg (188 bytes security) (deflated 12%)
  adding: doc/Swirl/HTMLreportComponentsDialog.jpg (188 bytes security) (deflated 10%)
  adding: doc/Swirl/ImageArrayPlotEnterExpression.jpg (188 bytes security) (deflated 11%)
  adding: doc/Swirl/ImageArrayPlotSelected.jpg (188 bytes security) (deflated 20%)
  adding: doc/Swirl/ImageArrayPlotSlide81.jpg (188 bytes security) (deflated 11%)
  adding: doc/Swirl/ImageProcessingFileType.jpg (188 bytes security) (deflated 14%)
  adding: doc/Swirl/index.html (188 bytes security) (deflated 67%)
  adding: doc/Swirl/LayoutParameters.jpg (188 bytes security) (deflated 7%)
  adding: doc/Swirl/limmaGUImainWindow.jpg (188 bytes security) (deflated 28%)
  adding: doc/Swirl/limmaGUImainWindowSwirlArraysLoaded.jpg (188 bytes security) (deflated 27%)
  adding: doc/Swirl/limmaGUINewFileSelected.jpg (188 bytes security) (deflated 26%)
  adding: doc/Swirl/LogOddsPlot.jpg (188 bytes security) (deflated 23%)
  adding: doc/Swirl/LogOddsPlotSelected.jpg (188 bytes security) (deflated 15%)
  adding: doc/Swirl/MAColorCodedScatterPlotSwirlFileClose.jpg (188 bytes security) (deflated 12%)
  adding: doc/Swirl/MAColorCodedScatterPlotSwirlSlide93.jpg (188 bytes security) (deflated 12%)
  adding: doc/Swirl/mainWindowAfterLinModFit.jpg (188 bytes security) (deflated 17%)
  adding: doc/Swirl/MAPlotFittedMValues.jpg (188 bytes security) (deflated 15%)
  adding: doc/Swirl/MAPlotFittedMValuesSelected.jpg (188 bytes security) (deflated 15%)
  adding: doc/Swirl/MAScatterSlide81.jpg (188 bytes security) (deflated 16%)
  adding: doc/Swirl/MBoxPlotByPrintTipGroup.jpg (188 bytes security) (deflated 17%)
  adding: doc/Swirl/MBoxPlotSelectedFromMenu.jpg (188 bytes security) (deflated 21%)
  adding: doc/Swirl/NormalizeBetweenArraysNo.jpg (188 bytes security) (deflated 10%)
  adding: doc/Swirl/NormalizeBetweenArraysYes.jpg (188 bytes security) (deflated 10%)
  adding: doc/Swirl/NormalizeWithinArrays.jpg (188 bytes security) (deflated 10%)
  adding: doc/Swirl/NumDuplicatesDialog.jpg (188 bytes security) (deflated 14%)
  adding: doc/Swirl/OpenGALandTargetsandSpotTypesFiles.jpg (188 bytes security) (deflated 12%)
  adding: doc/Swirl/OpeningFishGAL.jpg (188 bytes security) (deflated 24%)
  adding: doc/Swirl/OpeningWeaverLimmaFile.jpg (188 bytes security) (deflated 19%)
  adding: doc/Swirl/OpenTargetsFileDialog.jpg (188 bytes security) (deflated 23%)
  adding: doc/Swirl/PlotBoxPlotBySlide.jpg (188 bytes security) (deflated 8%)
  adding: doc/Swirl/PlotByPrintTipGroup.jpg (188 bytes security) (deflated 8%)
  adding: doc/Swirl/PlotLabelsDialog.jpg (188 bytes security) (deflated 20%)
  adding: doc/Swirl/PlotPointSymbolsAndColors.jpg (188 bytes security) (deflated 13%)
  adding: doc/Swirl/PlotTitleForImageArrayPlot.jpg (188 bytes security) (deflated 12%)
  adding: doc/Swirl/PNGImageParametersForHTML.jpg (188 bytes security) (deflated 14%)
  adding: doc/Swirl/PrintTipGroupMAPlotSelectedFromMenu.jpg (188 bytes security) (deflated 20%)
  adding: doc/Swirl/PrintTipGroupMAScatterPlotsSlide93.jpg (188 bytes security) (deflated 16%)
  adding: doc/Swirl/QQTplot.jpg (188 bytes security) (deflated 25%)
  adding: doc/Swirl/QQTplotSelected.jpg (188 bytes security) (deflated 15%)
  adding: doc/Swirl/SaveAsSelected.jpg (188 bytes security) (deflated 17%)
  adding: doc/Swirl/SaveLimmaFileDialog.jpg (188 bytes security) (deflated 21%)
  adding: doc/Swirl/SavingSwirlHTML.jpg (188 bytes security) (deflated 23%)
  adding: doc/Swirl/SavingSwirlLimmaFile.jpg (188 bytes security) (deflated 21%)
  adding: doc/Swirl/ScaleBoxPlot.jpg (188 bytes security) (deflated 26%)
  adding: doc/Swirl/SelectingParameterForSwirlLinearModel.jpg (188 bytes security) (deflated 17%)
  adding: doc/Swirl/ShowColorCodedSpotTypesNo.jpg (188 bytes security) (deflated 9%)
  adding: doc/Swirl/ShowTextResults.jpg (188 bytes security) (deflated 39%)
  adding: doc/Swirl/Slide81Selected.jpg (188 bytes security) (deflated 11%)
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  adding: doc/Swirl/SpotQualityWeighting.jpg (188 bytes security) (deflated 8%)
  adding: doc/Swirl/SpotsIncludedInLinearModel.jpg (188 bytes security) (deflated 13%)
  adding: doc/Swirl/SpotTypesTable.jpg (188 bytes security) (deflated 15%)
  adding: doc/Swirl/SwirlChooseParameterization.jpg (188 bytes security) (deflated 13%)
  adding: doc/Swirl/SwirlColorCodedMAPlotSelectedFromPlotMenu.jpg (188 bytes security) (deflated 20%)
  adding: doc/Swirl/SwirlDesignMatrix.jpg (188 bytes security) (deflated 21%)
  adding: doc/Swirl/SwirlGAL.jpg (188 bytes security) (deflated 21%)
  adding: doc/Swirl/SwirlGetParameter.jpg (188 bytes security) (deflated 13%)
  adding: doc/Swirl/SwirlLayout.jpg (188 bytes security) (deflated 7%)
  adding: doc/Swirl/SwirlLimmaFileNameInTitleBar.jpg (188 bytes security) (deflated 18%)
  adding: doc/Swirl/SwirlLinearModelComputed.jpg (188 bytes security) (deflated 19%)
  adding: doc/Swirl/SwirlParameterizationAsPairs.jpg (188 bytes security) (deflated 10%)
  adding: doc/Swirl/SwirlParameterizationName.jpg (188 bytes security) (deflated 7%)
  adding: doc/Swirl/SwirlQQTplot.jpg (188 bytes security) (deflated 25%)
  adding: doc/Swirl/SwirlRNATargets.jpg (188 bytes security) (deflated 20%)
  adding: doc/Swirl/SwirlSpotTypes.jpg (188 bytes security) (deflated 8%)
  adding: doc/Swirl/SwirlTargets.jpg (188 bytes security) (deflated 5%)
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  adding: doc/Swirl/ToptableOptions.jpg (188 bytes security) (deflated 16%)
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  adding: doc/Swirl/UseBackgroundCorrection.jpg (188 bytes security) (deflated 10%)
  adding: doc/Swirl/ViewExistingParameterizationSelected.jpg (188 bytes security) (deflated 16%)
  adding: doc/Weaver/ (208 bytes security) (stored 0%)
  adding: doc/Weaver/ChooseParameterIA.jpg (188 bytes security) (deflated 22%)
  adding: doc/Weaver/ChooseParameterizationIA.jpg (188 bytes security) (deflated 14%)
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  adding: doc/Weaver/CreateNewParameterizationNo.jpg (188 bytes security) (deflated 10%)
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  adding: doc/Weaver/DropDownsAdvancedSelected.jpg (188 bytes security) (deflated 21%)
  adding: doc/Weaver/EvaluateSelected.jpg (188 bytes security) (deflated 19%)
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  adding: doc/Weaver/IAParameterizationName.jpg (188 bytes security) (deflated 10%)
  adding: doc/Weaver/IAtoptable.jpg (188 bytes security) (deflated 22%)
  adding: doc/Weaver/index.html (188 bytes security) (deflated 64%)
  adding: doc/Weaver/MMPlotCutOffValueDialog.jpg (188 bytes security) (deflated 13%)
  adding: doc/Weaver/MMplotMutant11Mutant21.jpg (188 bytes security) (deflated 21%)
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  adding: doc/Weaver/NormalizeBetweenArraysNo.jpg (188 bytes security) (deflated 10%)
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  adding: doc/Weaver/OpeningDesignIA.jpg (188 bytes security) (deflated 20%)
  adding: doc/Weaver/OpeningWeaverLimmaFile.jpg (188 bytes security) (deflated 19%)
  adding: doc/Weaver/OpenSelected.jpg (188 bytes security) (deflated 26%)
  adding: doc/Weaver/ParameterizationNameMt.jpg (188 bytes security) (deflated 9%)
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  adding: doc/Weaver/RcodeForHeatDiagram.jpg (188 bytes security) (deflated 47%)
  adding: doc/Weaver/SavingWeaverIALimma.jpg (188 bytes security) (deflated 19%)
  adding: doc/Weaver/ShowGraphicalResultsOnly.jpg (188 bytes security) (deflated 40%)
  adding: doc/Weaver/SpotsIncludedInLinearModel.jpg (188 bytes security) (deflated 13%)
  adding: doc/Weaver/SpotTypesForLinearModel.jpg (188 bytes security) (deflated 13%)
  adding: doc/Weaver/ToptableSelectedIA.jpg (188 bytes security) (deflated 17%)
  adding: doc/Weaver/WeaverIASaveAs.jpg (188 bytes security) (deflated 17%)
  adding: doc/Weaver/WeaverScaleBoxPlot.jpg (188 bytes security) (deflated 28%)
  adding: doc/Weaver/WeaverTargets.jpg (188 bytes security) (deflated 15%)
  adding: doc/windowsFocus.html (188 bytes security) (deflated 59%)
  adding: etc/ (208 bytes security) (stored 0%)
  adding: etc/hist.R (188 bytes security) (deflated 51%)
  adding: etc/limmaGUI-menus.txt (188 bytes security) (deflated 85%)
  adding: etc/recent-files.txt (188 bytes security) (stored 0%)
  adding: help/ (208 bytes security) (stored 0%)
  adding: help/aliases.rds (188 bytes security) (stored 0%)
  adding: help/AnIndex (188 bytes security) (deflated 71%)
  adding: help/limmaGUI.rdb (188 bytes security) (deflated 1%)
  adding: help/limmaGUI.rdx (188 bytes security) (stored 0%)
  adding: help/paths.rds (188 bytes security) (stored 0%)
  adding: html/ (208 bytes security) (stored 0%)
  adding: html/00Index.html (188 bytes security) (deflated 91%)
  adding: html/R.css (188 bytes security) (deflated 75%)
  adding: INDEX (188 bytes security) (deflated 41%)
  adding: MD5 (188 bytes security) (deflated 59%)
  adding: Meta/ (208 bytes security) (stored 0%)
  adding: Meta/hsearch.rds (188 bytes security) (stored 0%)
  adding: Meta/links.rds (188 bytes security) (stored 0%)
  adding: Meta/nsInfo.rds (188 bytes security) (stored 0%)
  adding: Meta/package.rds (188 bytes security) (stored 0%)
  adding: Meta/Rd.rds (188 bytes security) (stored 0%)
  adding: Meta/vignette.rds (188 bytes security) (stored 0%)
  adding: NAMESPACE (188 bytes security) (deflated 15%)
  adding: R/ (208 bytes security) (stored 0%)
  adding: R/limmaGUI (188 bytes security) (deflated 41%)
  adding: R/limmaGUI.rdb (188 bytes security) (deflated 0%)
  adding: R/limmaGUI.rdx (188 bytes security) (stored 0%)
BioC 3.4: BUILD BIN report for limmaGUI on moscato1

Summary

Command output
