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BioC 3.4: BUILD BIN report for scran on morelia

This page was generated on 2017-04-15 16:27:40 -0400 (Sat, 15 Apr 2017).

Package 1117/1296HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
scran 1.2.2
Aaron Lun
Snapshot Date: 2017-04-14 17:17:13 -0400 (Fri, 14 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_4/madman/Rpacks/scran
Last Changed Rev: 126005 / Revision: 128728
Last Changed Date: 2017-01-18 07:52:47 -0500 (Wed, 18 Jan 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: scran
Version: 1.2.2
Command: rm -rf scran.buildbin-libdir && mkdir scran.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh scran_1.2.2.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R scran.buildbin-libdir
StartedAt: 2017-04-15 11:01:18 -0700 (Sat, 15 Apr 2017)
EndedAt: 2017-04-15 11:01:37 -0700 (Sat, 15 Apr 2017)
EllapsedTime: 19.2 seconds
RetCode: 0
Status:  OK 
PackageFile: scran_1.2.2.tgz
PackageFileSize: 599.3 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf scran.buildbin-libdir && mkdir scran.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh scran_1.2.2.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R scran.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=scran.buildbin-libdir scran_1.2.2.tar.gz'
>>>>>>> 

* installing *source* package ‘scran’ ...
** libs
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c compute_CV2.cpp -o compute_CV2.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c compute_cordist.cpp -o compute_cordist.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c compute_rho.cpp -o compute_rho.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c estimate_variance.cpp -o estimate_variance.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c forge_system.cpp -o forge_system.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c init.cpp -o init.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c matrix_info.cpp -o matrix_info.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c run_dormqr.cpp -o run_dormqr.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c shuffle_scores.cpp -o shuffle_scores.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o scran.so compute_CV2.o compute_cordist.o compute_rho.o estimate_variance.o forge_system.o init.o matrix_info.o run_dormqr.o shuffle_scores.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.4-bioc/meat/scran.buildbin-libdir/scran/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (scran)


>>>>>>> 
>>>>>>> FIXING LINKS FOR scran.buildbin-libdir/scran/libs//scran.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgcc_s.1.dylib" "scran.buildbin-libdir/scran/libs//scran.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgfortran.3.dylib" "scran.buildbin-libdir/scran/libs//scran.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.5.2.dylib" "scran.buildbin-libdir/scran/libs//scran.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.dylib" "scran.buildbin-libdir/scran/libs//scran.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libquadmath.0.dylib" "scran.buildbin-libdir/scran/libs//scran.so"