sigaR 1.20.0
Wessel N. van Wieringen
| Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/sigaR | | Last Changed Rev: 117267 / Revision: 121152 | | Last Changed Date: 2016-05-10 01:02:00 -0700 (Tue, 10 May 2016) |
| zin1 | Linux (Ubuntu 16.04 LTS) / x86_64 | OK | ERROR | skipped | | |
| moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | OK | [ ERROR ] | skipped | skipped | |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | OK | ERROR | skipped | skipped | |
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### Running command:
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### chmod a+r sigaR -R && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data sigaR
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* checking for file 'sigaR/DESCRIPTION' ... OK
* preparing 'sigaR':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ...Warning: running command '"D:/biocbld/bbs-3.4-bioc/R/bin/x64/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
ERROR
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
rbind, rownames, sapply, setdiff, sort, table, tapply, union,
unique, unsplit, which, which.max, which.min
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: CGHbase
Loading required package: marray
Loading required package: limma
Attaching package: 'limma'
The following object is masked from 'package:BiocGenerics':
plotMA
Loading required package: mvtnorm
Loading required package: CGHcall
Loading required package: impute
Loading required package: DNAcopy
Loading required package: snowfall
Loading required package: snow
Attaching package: 'snow'
The following objects are masked from 'package:BiocGenerics':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, clusterSplit, parApply, parCapply,
parLapply, parRapply, parSapply
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, clusterSplit, makeCluster, parApply,
parCapply, parLapply, parRapply, parSapply, splitIndices,
stopCluster
Attaching package: 'CGHcall'
The following object is masked from 'package:BiocGenerics':
normalize
Warning in cghCall2subset(pollackCN16, matchIDs[, 1], verbose = FALSE) :
modified feature names are returned
Warning in cghCall2weightedSubset(pollackCN16, matchedIDsCN, 1, 2, 3, verbose = FALSE) :
modified feature names are returned
Warning in cghCall2subset(CNdata, rep(geneId, 2), verbose) :
modified feature names are returned
Error: processing vignette 'sigaR.Rnw' failed with diagnostics:
chunk 14
Error in .validate_assayDataElementReplace(obj, value) :
object and replacement value have different dimensions
Execution halted