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BioC 3.4: INSTALL report for zlibbioc on tokay1

This page was generated on 2017-04-15 16:16:41 -0400 (Sat, 15 Apr 2017).

Package 1296/1296HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
zlibbioc 1.20.0
Bioconductor Package Maintainer
Snapshot Date: 2017-04-14 17:17:13 -0400 (Fri, 14 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_4/madman/Rpacks/zlibbioc
Last Changed Rev: 122710 / Revision: 128728
Last Changed Date: 2016-10-17 14:45:06 -0400 (Mon, 17 Oct 2016)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: zlibbioc
Version: 1.20.0
Command: rm -rf zlibbioc.buildbin-libdir && mkdir zlibbioc.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.4/bioc/src/contrib/zlibbioc_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --library=zlibbioc.buildbin-libdir --merge-multiarch zlibbioc_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL zlibbioc_1.20.0.zip && rm zlibbioc_1.20.0.tar.gz zlibbioc_1.20.0.zip
StartedAt: 2017-04-14 18:07:39 -0400 (Fri, 14 Apr 2017)
EndedAt: 2017-04-14 18:09:23 -0400 (Fri, 14 Apr 2017)
EllapsedTime: 103.8 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf zlibbioc.buildbin-libdir && mkdir zlibbioc.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.4/bioc/src/contrib/zlibbioc_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --library=zlibbioc.buildbin-libdir --merge-multiarch zlibbioc_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL zlibbioc_1.20.0.zip  && rm zlibbioc_1.20.0.tar.gz zlibbioc_1.20.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  165k  100  165k    0     0  2784k      0 --:--:-- --:--:-- --:--:-- 2851k

install for i386

* installing *source* package 'zlibbioc' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
mkdir -p "C:/Users/biocbuild/bbs-3.4-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/include" "C:/Users/biocbuild/bbs-3.4-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/libs/i386"
make -C zlib-1.2.5 -fwin32/Makefile.gcc libzbioc.a zlib1bioc.dll
make[1]: Entering directory `/cygdrive/c/Users/biocbuild/bbs-3.4-bioc/tmpdir/Rtmp4WUSBg/R.INSTALLf20c236c54/zlibbioc/src/zlib-1.2.5'
C:/Rtools/mingw_32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o adler32.o adler32.c
C:/Rtools/mingw_32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o compress.o compress.c
C:/Rtools/mingw_32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o crc32.o crc32.c
C:/Rtools/mingw_32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o deflate.o deflate.c
C:/Rtools/mingw_32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzclose.o gzclose.c
C:/Rtools/mingw_32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzlib.o gzlib.c
C:/Rtools/mingw_32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzread.o gzread.c
C:/Rtools/mingw_32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzwrite.o gzwrite.c
C:/Rtools/mingw_32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o infback.o infback.c
C:/Rtools/mingw_32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inffast.o inffast.c
C:/Rtools/mingw_32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inflate.o inflate.c
C:/Rtools/mingw_32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inftrees.o inftrees.c
C:/Rtools/mingw_32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o trees.o trees.c
C:/Rtools/mingw_32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o uncompr.o uncompr.c
C:/Rtools/mingw_32/bin/gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o zutil.o zutil.c
C:/Rtools/mingw_32/bin/ar rcs libzbioc.a adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o 
C:/Rtools/mingw_32/bin/windres --define GCC_WINDRES --target=pe-i386 -o zlibrc.o win32/zlib1.rc
C:/Rtools/mingw_32/bin/gcc -m32 -shared -Wl,--out-implib,libzbiocdll.a  \
-o zlib1bioc.dll win32/zlib.def adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o  zlibrc.o
C:/Rtools/mingw_32/bin/strip zlib1bioc.dll
make[1]: Leaving directory `/cygdrive/c/Users/biocbuild/bbs-3.4-bioc/tmpdir/Rtmp4WUSBg/R.INSTALLf20c236c54/zlibbioc/src/zlib-1.2.5'
cp zlib-1.2.5/libzbioc.a zlib-1.2.5/zlib1bioc.dll \
            "C:/Users/biocbuild/bbs-3.4-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/libs/i386"
cp zlib-1.2.5/zconf.h zlib-1.2.5/zlib.h "C:/Users/biocbuild/bbs-3.4-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/include"
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c R_init_zlibbioc.c -o R_init_zlibbioc.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o zlibbioc.dll tmp.def R_init_zlibbioc.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.4-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/libs/i386
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'zlibbioc' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
mkdir -p "C:/Users/biocbuild/bbs-3.4-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/include" "C:/Users/biocbuild/bbs-3.4-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/libs/x64"
make -C zlib-1.2.5 -fwin32/Makefile.gcc libzbioc.a zlib1bioc.dll
make[1]: Entering directory `/cygdrive/c/Users/biocbuild/bbs-3.4-bioc/tmpdir/RtmpYx4CKz/R.INSTALL122460cc4dcc/zlibbioc/src/zlib-1.2.5'
C:/Rtools/mingw_64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o adler32.o adler32.c
C:/Rtools/mingw_64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o compress.o compress.c
C:/Rtools/mingw_64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o crc32.o crc32.c
C:/Rtools/mingw_64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o deflate.o deflate.c
C:/Rtools/mingw_64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzclose.o gzclose.c
C:/Rtools/mingw_64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzlib.o gzlib.c
C:/Rtools/mingw_64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzread.o gzread.c
C:/Rtools/mingw_64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzwrite.o gzwrite.c
C:/Rtools/mingw_64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o infback.o infback.c
C:/Rtools/mingw_64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inffast.o inffast.c
C:/Rtools/mingw_64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inflate.o inflate.c
C:/Rtools/mingw_64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inftrees.o inftrees.c
C:/Rtools/mingw_64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o trees.o trees.c
C:/Rtools/mingw_64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o uncompr.o uncompr.c
C:/Rtools/mingw_64/bin/gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o zutil.o zutil.c
C:/Rtools/mingw_64/bin/ar rcs libzbioc.a adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o 
C:/Rtools/mingw_64/bin/windres --define GCC_WINDRES --target=pe-x86-64 -o zlibrc.o win32/zlib1.rc
C:/Rtools/mingw_64/bin/gcc -m64 -shared -Wl,--out-implib,libzbiocdll.a  \
-o zlib1bioc.dll win32/zlib.def adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o  zlibrc.o
C:/Rtools/mingw_64/bin/strip zlib1bioc.dll
make[1]: Leaving directory `/cygdrive/c/Users/biocbuild/bbs-3.4-bioc/tmpdir/RtmpYx4CKz/R.INSTALL122460cc4dcc/zlibbioc/src/zlib-1.2.5'
cp zlib-1.2.5/libzbioc.a zlib-1.2.5/zlib1bioc.dll \
            "C:/Users/biocbuild/bbs-3.4-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/libs/x64"
cp zlib-1.2.5/zconf.h zlib-1.2.5/zlib.h "C:/Users/biocbuild/bbs-3.4-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/include"
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c R_init_zlibbioc.c -o R_init_zlibbioc.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o zlibbioc.dll tmp.def R_init_zlibbioc.o -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.4-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'zlibbioc' as zlibbioc_1.20.0.zip
* DONE (zlibbioc)
* installing to library 'C:/Users/biocbuild/bbs-3.4-bioc/R/library'
package 'zlibbioc' successfully unpacked and MD5 sums checked