BioC experimental data: CHECK report for ChAMPdata on malbec1

Package: ChAMPdata

Version: 2.6.0

Command: /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings ChAMPdata_2.6.0.tar.gz

StartedAt: 2017-04-15 10:44:29 -0400 (Sat, 15 Apr 2017)

EndedAt: 2017-04-15 10:47:59 -0400 (Sat, 15 Apr 2017)

EllapsedTime: 209.9 seconds

RetCode: 0

Status:  OK

CheckDir: ChAMPdata.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings ChAMPdata_2.6.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.4-data-experiment/meat/ChAMPdata.Rcheck’
* using R version 3.3.3 (2017-03-06)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ChAMPdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ChAMPdata’ version ‘2.6.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ChAMPdata’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 689.3Mb
  sub-directories of 1Mb or more:
    data     565.6Mb
    extdata  123.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                    user system elapsed
ChAMPdata-package 35.408  0.680  36.107
testDataSet       10.632  0.052  10.688
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.4-data-experiment/meat/ChAMPdata.Rcheck/00check.log’
for details.

* installing *source* package ‘ChAMPdata’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (ChAMPdata)

name	user	system	elapsed
CellTypeMeans27K	0.016	0.004	0.020
CellTypeMeans450K	0.000	0.000	0.002
ChAMPdata-package	35.408	0.680	36.107
ControlProbes450K	0.004	0.000	0.001
ControlProbesEPIC	0.000	0.000	0.002
EPIC.manifest.hg38	4.588	0.060	4.651
EPIC.manifest.pop.hg38	0.844	0.040	0.884
EPICSimData	2.952	0.028	2.981
MatchGeneName	0.024	0.000	0.025
PathwayList	0.584	0.000	0.582
bloodCtl	0.000	0.000	0.002
hm450.manifest.hg38	2.508	0.024	2.537
hm450.manifest.pop.hg38	1.148	0.008	1.157
hprdAsigH	3.464	0.684	4.152
illumina450Gr	1.736	0.012	1.751
illuminaEPICGr	2.568	0.000	2.569
multi.hit	0.832	0.004	0.839
probe.features	0.732	0.000	0.733
probe.features.epic	1.676	0.008	1.684
probeInfoALL.epic.lv	0.712	0.000	0.712
probeInfoALL.lv	0.532	0.000	0.530
snp.hit	0.896	0.008	0.905
testDataSet	10.632	0.052	10.688