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BioC experimental data: CHECK report for DvDdata on zin1

This page was generated on 2016-09-17 20:15:00 -0700 (Sat, 17 Sep 2016).

Package 81/304HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DvDdata 1.9.0
J. Saez-Rodriguez
Snapshot Date: 2016-09-17 09:20:18 -0700 (Sat, 17 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/DvDdata
Last Changed Rev: 3763 / Revision: 3889
Last Changed Date: 2016-05-03 14:48:02 -0700 (Tue, 03 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: DvDdata
Version: 1.9.0
Command: /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings DvDdata_1.9.0.tar.gz
StartedAt: 2016-09-17 11:33:12 -0700 (Sat, 17 Sep 2016)
EndedAt: 2016-09-17 11:33:44 -0700 (Sat, 17 Sep 2016)
EllapsedTime: 32.6 seconds
RetCode: 0
Status:  OK 
CheckDir: DvDdata.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings DvDdata_1.9.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.4-data-experiment/meat/DvDdata.Rcheck’
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘DvDdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DvDdata’ version ‘1.9.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DvDdata’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 44.2Mb
  sub-directories of 1Mb or more:
    data  43.9Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... NOTE
prepare_Rd: DvDdata-package.Rd:35-37: Dropping empty section \seealso
prepare_Rd: GEOfactorvalues.Rd:18-20: Dropping empty section \references
prepare_Rd: annotationlist.Rd:17-18: Dropping empty section \source
prepare_Rd: druglabels.Rd:11-13: Dropping empty section \details
prepare_Rd: genelist.Rd:14-16: Dropping empty section \source
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.4-data-experiment/meat/DvDdata.Rcheck/00check.log’
for details.


DvDdata.Rcheck/00install.out:

* installing *source* package ‘DvDdata’ ...
** data
*** moving datasets to lazyload DB
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DvDdata)

DvDdata.Rcheck/DvDdata-Ex.timings:

nameusersystemelapsed
DvDdata-package0.0080.0040.014
GEOfactorvalues0.0000.0040.001
annotationlist0.0000.0000.001
cytodisease0.0000.0000.001
cytodrug0.0000.0000.001
diseaseClusters0.0000.0000.001
diseaseRL0.0000.0000.001
diseaselabels0.0000.0000.001
drugClusters0.0000.0000.001
drugRL0.0000.0000.001
druglabels0.0000.0000.001
genelist0.0000.0000.001