BioC experimental data: CHECK report for FANTOM3and4CAGE on moscato1

Package: FANTOM3and4CAGE

Version: 1.9.0

Command: rm -rf FANTOM3and4CAGE.buildbin-libdir FANTOM3and4CAGE.Rcheck && mkdir FANTOM3and4CAGE.buildbin-libdir FANTOM3and4CAGE.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=FANTOM3and4CAGE.buildbin-libdir FANTOM3and4CAGE_1.9.0.tar.gz >FANTOM3and4CAGE.Rcheck\00install.out 2>&1 && cp FANTOM3and4CAGE.Rcheck\00install.out FANTOM3and4CAGE-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=FANTOM3and4CAGE.buildbin-libdir --install="check:FANTOM3and4CAGE-install.out" --force-multiarch --no-vignettes --timings FANTOM3and4CAGE_1.9.0.tar.gz

StartedAt: 2016-05-28 14:23:07 -0700 (Sat, 28 May 2016)

EndedAt: 2016-05-28 14:25:07 -0700 (Sat, 28 May 2016)

EllapsedTime: 120.4 seconds

RetCode: 0

Status:  OK

CheckDir: FANTOM3and4CAGE.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf FANTOM3and4CAGE.buildbin-libdir FANTOM3and4CAGE.Rcheck && mkdir FANTOM3and4CAGE.buildbin-libdir FANTOM3and4CAGE.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=FANTOM3and4CAGE.buildbin-libdir FANTOM3and4CAGE_1.9.0.tar.gz >FANTOM3and4CAGE.Rcheck\00install.out 2>&1 && cp FANTOM3and4CAGE.Rcheck\00install.out FANTOM3and4CAGE-install.out  && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=FANTOM3and4CAGE.buildbin-libdir --install="check:FANTOM3and4CAGE-install.out" --force-multiarch --no-vignettes --timings FANTOM3and4CAGE_1.9.0.tar.gz
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* using log directory 'D:/biocbld/bbs-3.4-data-experiment/meat/FANTOM3and4CAGE.Rcheck'
* using R version 3.3.0 (2016-05-03)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'FANTOM3and4CAGE/DESCRIPTION' ... OK
* this is package 'FANTOM3and4CAGE' version '1.9.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'FANTOM3and4CAGE' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 34.6Mb
  sub-directories of 1Mb or more:
    data  34.3Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                           user system elapsed
FANTOMtissueCAGEhuman     11.46   0.28   11.75
FANTOMtimecourseCAGEhuman  5.20   0.10    5.29
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
FANTOMtissueCAGEhuman 9.71   0.35   10.06
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbld/bbs-3.4-data-experiment/meat/FANTOM3and4CAGE.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'FANTOM3and4CAGE' ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'FANTOM3and4CAGE' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'FANTOM3and4CAGE' as FANTOM3and4CAGE_1.9.0.zip
* DONE (FANTOM3and4CAGE)

name	user	system	elapsed
FANTOMhumanSamples	0.01	0.00	0.02
FANTOMmouseSamples	0.02	0.00	0.01
FANTOMtimecourseCAGEhuman	5.20	0.10	5.29
FANTOMtimecourseCAGEmouse	0.45	0.01	0.47
FANTOMtissueCAGEhuman	11.46	0.28	11.75
FANTOMtissueCAGEmouse	4.64	0.28	4.91

name	user	system	elapsed
FANTOMhumanSamples	0.01	0.01	0.03
FANTOMmouseSamples	0.02	0.00	0.02
FANTOMtimecourseCAGEhuman	4.87	0.06	4.93
FANTOMtimecourseCAGEmouse	0.35	0.00	0.36
FANTOMtissueCAGEhuman	9.71	0.35	10.06
FANTOMtissueCAGEmouse	3.91	0.15	4.07