Back to the "Multiple platform build/check report"

BioC experimental data: BUILD BIN report for RNAseqData.HNRNPC.bam.chr14 on moscato1

This page was generated on 2016-05-28 20:31:16 -0700 (Sat, 28 May 2016).

Package 229/292HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RNAseqData.HNRNPC.bam.chr14 0.11.0
H. Pages
Snapshot Date: 2016-05-28 09:20:19 -0700 (Sat, 28 May 2016)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/RNAseqData.HNRNPC.bam.chr14
Last Changed Rev: 3763 / Revision: 3781
Last Changed Date: 2016-05-03 14:48:02 -0700 (Tue, 03 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK  OK [ OK ]

Summary

Package: RNAseqData.HNRNPC.bam.chr14
Version: 0.11.0
Command: cd RNAseqData.HNRNPC.bam.chr14.buildbin-libdir/RNAseqData.HNRNPC.bam.chr14 && zip -r ../../RNAseqData.HNRNPC.bam.chr14_0.11.0.zip . & cd ../..
StartedAt: 2016-05-28 19:09:43 -0700 (Sat, 28 May 2016)
EndedAt: 2016-05-28 19:15:07 -0700 (Sat, 28 May 2016)
EllapsedTime: 324.2 seconds
RetCode: 0
Status:  OK  
PackageFile: RNAseqData.HNRNPC.bam.chr14_0.11.0.zip
PackageFileSize: 665.5 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   cd RNAseqData.HNRNPC.bam.chr14.buildbin-libdir/RNAseqData.HNRNPC.bam.chr14 && zip -r ../../RNAseqData.HNRNPC.bam.chr14_0.11.0.zip . & cd ../..
###
##############################################################################
##############################################################################


Scanning files  .
  adding: DESCRIPTION (188 bytes security) (deflated 38%)
  adding: extdata/ (208 bytes security) (stored 0%)
  adding: extdata/ERR127302_chr14.bam (188 bytes security) (deflated 0%)
  adding: extdata/ERR127302_chr14.bam.bai (188 bytes security) (deflated 73%)
  adding: extdata/ERR127303_chr14.bam (188 bytes security) (deflated 0%)
  adding: extdata/ERR127303_chr14.bam.bai (188 bytes security) (deflated 72%)
  adding: extdata/ERR127304_chr14.bam (188 bytes security) (deflated 0%)
  adding: extdata/ERR127304_chr14.bam.bai (188 bytes security) (deflated 72%)
  adding: extdata/ERR127305_chr14.bam (188 bytes security) (deflated 0%)
  adding: extdata/ERR127305_chr14.bam.bai (188 bytes security) (deflated 73%)
  adding: extdata/ERR127306_chr14.bam (188 bytes security) (deflated 0%)
  adding: extdata/ERR127306_chr14.bam.bai (188 bytes security) (deflated 73%)
  adding: extdata/ERR127307_chr14.bam (188 bytes security) (deflated 0%)
  adding: extdata/ERR127307_chr14.bam.bai (188 bytes security) (deflated 72%)
  adding: extdata/ERR127308_chr14.bam (188 bytes security) (deflated 0%)
  adding: extdata/ERR127308_chr14.bam.bai (188 bytes security) (deflated 73%)
  adding: extdata/ERR127309_chr14.bam (188 bytes security) (deflated 0%)
  adding: extdata/ERR127309_chr14.bam.bai (188 bytes security) (deflated 73%)
  adding: extdata/tophat2_out/ (208 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127302/ (208 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127302/deletions.bed (188 bytes security) (deflated 76%)
  adding: extdata/tophat2_out/ERR127302/insertions.bed (188 bytes security) (deflated 76%)
  adding: extdata/tophat2_out/ERR127302/junctions.bed (188 bytes security) (deflated 75%)
  adding: extdata/tophat2_out/ERR127302/logs/ (208 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127302/logs/bam_merge_um.log (188 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127302/logs/bowtie.left_kept_reads.log (188 bytes security) (deflated 34%)
  adding: extdata/tophat2_out/ERR127302/logs/bowtie.left_kept_reads_seg1.log (188 bytes security) (deflated 35%)
  adding: extdata/tophat2_out/ERR127302/logs/bowtie.left_kept_reads_seg2.log (188 bytes security) (deflated 35%)
  adding: extdata/tophat2_out/ERR127302/logs/bowtie.left_kept_reads_seg3.log (188 bytes security) (deflated 35%)
  adding: extdata/tophat2_out/ERR127302/logs/bowtie.right_kept_reads.log (188 bytes security) (deflated 34%)
  adding: extdata/tophat2_out/ERR127302/logs/bowtie.right_kept_reads_seg1.log (188 bytes security) (deflated 35%)
  adding: extdata/tophat2_out/ERR127302/logs/bowtie.right_kept_reads_seg2.log (188 bytes security) (deflated 34%)
  adding: extdata/tophat2_out/ERR127302/logs/bowtie.right_kept_reads_seg3.log (188 bytes security) (deflated 35%)
  adding: extdata/tophat2_out/ERR127302/logs/bowtie_build.log (188 bytes security) (deflated 85%)
  adding: extdata/tophat2_out/ERR127302/logs/juncs_db.log (188 bytes security) (deflated 86%)
  adding: extdata/tophat2_out/ERR127302/logs/long_spanning_reads.segs.log (188 bytes security) (deflated 48%)
  adding: extdata/tophat2_out/ERR127302/logs/prep_reads.log (188 bytes security) (deflated 43%)
  adding: extdata/tophat2_out/ERR127302/logs/reports.log (188 bytes security) (deflated 82%)
  adding: extdata/tophat2_out/ERR127302/logs/reports.merge_bam.log (188 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127302/logs/reports.samtools_sort.log0 (188 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127302/logs/reports.samtools_sort.log1 (188 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127302/logs/run.log (188 bytes security) (deflated 92%)
  adding: extdata/tophat2_out/ERR127302/logs/segment_juncs.log (188 bytes security) (deflated 84%)
  adding: extdata/tophat2_out/ERR127302/logs/tophat.log (188 bytes security) (deflated 71%)
  adding: extdata/tophat2_out/ERR127302/prep_reads.info (188 bytes security) (deflated 55%)
  adding: extdata/tophat2_out/ERR127303/ (208 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127303/deletions.bed (188 bytes security) (deflated 77%)
  adding: extdata/tophat2_out/ERR127303/insertions.bed (188 bytes security) (deflated 76%)
  adding: extdata/tophat2_out/ERR127303/junctions.bed (188 bytes security) (deflated 75%)
  adding: extdata/tophat2_out/ERR127303/logs/ (208 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127303/logs/bam_merge_um.log (188 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127303/logs/bowtie.left_kept_reads.log (188 bytes security) (deflated 36%)
  adding: extdata/tophat2_out/ERR127303/logs/bowtie.left_kept_reads_seg1.log (188 bytes security) (deflated 35%)
  adding: extdata/tophat2_out/ERR127303/logs/bowtie.left_kept_reads_seg2.log (188 bytes security) (deflated 34%)
  adding: extdata/tophat2_out/ERR127303/logs/bowtie.left_kept_reads_seg3.log (188 bytes security) (deflated 36%)
  adding: extdata/tophat2_out/ERR127303/logs/bowtie.right_kept_reads.log (188 bytes security) (deflated 34%)
  adding: extdata/tophat2_out/ERR127303/logs/bowtie.right_kept_reads_seg1.log (188 bytes security) (deflated 35%)
  adding: extdata/tophat2_out/ERR127303/logs/bowtie.right_kept_reads_seg2.log (188 bytes security) (deflated 37%)
  adding: extdata/tophat2_out/ERR127303/logs/bowtie.right_kept_reads_seg3.log (188 bytes security) (deflated 33%)
  adding: extdata/tophat2_out/ERR127303/logs/bowtie_build.log (188 bytes security) (deflated 84%)
  adding: extdata/tophat2_out/ERR127303/logs/juncs_db.log (188 bytes security) (deflated 86%)
  adding: extdata/tophat2_out/ERR127303/logs/long_spanning_reads.segs.log (188 bytes security) (deflated 48%)
  adding: extdata/tophat2_out/ERR127303/logs/prep_reads.log (188 bytes security) (deflated 43%)
  adding: extdata/tophat2_out/ERR127303/logs/reports.log (188 bytes security) (deflated 82%)
  adding: extdata/tophat2_out/ERR127303/logs/reports.merge_bam.log (188 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127303/logs/reports.samtools_sort.log0 (188 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127303/logs/reports.samtools_sort.log1 (188 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127303/logs/run.log (188 bytes security) (deflated 92%)
  adding: extdata/tophat2_out/ERR127303/logs/segment_juncs.log (188 bytes security) (deflated 84%)
  adding: extdata/tophat2_out/ERR127303/logs/tophat.log (188 bytes security) (deflated 72%)
  adding: extdata/tophat2_out/ERR127303/prep_reads.info (188 bytes security) (deflated 55%)
  adding: extdata/tophat2_out/ERR127304/ (208 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127304/deletions.bed (188 bytes security) (deflated 77%)
  adding: extdata/tophat2_out/ERR127304/insertions.bed (188 bytes security) (deflated 76%)
  adding: extdata/tophat2_out/ERR127304/junctions.bed (188 bytes security) (deflated 75%)
  adding: extdata/tophat2_out/ERR127304/logs/ (208 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127304/logs/bam_merge_um.log (188 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127304/logs/bowtie.left_kept_reads.log (188 bytes security) (deflated 35%)
  adding: extdata/tophat2_out/ERR127304/logs/bowtie.left_kept_reads_seg1.log (188 bytes security) (deflated 35%)
  adding: extdata/tophat2_out/ERR127304/logs/bowtie.left_kept_reads_seg2.log (188 bytes security) (deflated 35%)
  adding: extdata/tophat2_out/ERR127304/logs/bowtie.left_kept_reads_seg3.log (188 bytes security) (deflated 36%)
  adding: extdata/tophat2_out/ERR127304/logs/bowtie.right_kept_reads.log (188 bytes security) (deflated 35%)
  adding: extdata/tophat2_out/ERR127304/logs/bowtie.right_kept_reads_seg1.log (188 bytes security) (deflated 35%)
  adding: extdata/tophat2_out/ERR127304/logs/bowtie.right_kept_reads_seg2.log (188 bytes security) (deflated 36%)
  adding: extdata/tophat2_out/ERR127304/logs/bowtie.right_kept_reads_seg3.log (188 bytes security) (deflated 34%)
  adding: extdata/tophat2_out/ERR127304/logs/bowtie_build.log (188 bytes security) (deflated 85%)
  adding: extdata/tophat2_out/ERR127304/logs/juncs_db.log (188 bytes security) (deflated 86%)
  adding: extdata/tophat2_out/ERR127304/logs/long_spanning_reads.segs.log (188 bytes security) (deflated 48%)
  adding: extdata/tophat2_out/ERR127304/logs/prep_reads.log (188 bytes security) (deflated 43%)
  adding: extdata/tophat2_out/ERR127304/logs/reports.log (188 bytes security) (deflated 82%)
  adding: extdata/tophat2_out/ERR127304/logs/reports.merge_bam.log (188 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127304/logs/reports.samtools_sort.log0 (188 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127304/logs/reports.samtools_sort.log1 (188 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127304/logs/run.log (188 bytes security) (deflated 92%)
  adding: extdata/tophat2_out/ERR127304/logs/segment_juncs.log (188 bytes security) (deflated 84%)
  adding: extdata/tophat2_out/ERR127304/logs/tophat.log (188 bytes security) (deflated 72%)
  adding: extdata/tophat2_out/ERR127304/prep_reads.info (188 bytes security) (deflated 55%)
  adding: extdata/tophat2_out/ERR127305/ (208 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127305/deletions.bed (188 bytes security) (deflated 77%)
  adding: extdata/tophat2_out/ERR127305/insertions.bed (188 bytes security) (deflated 76%)
  adding: extdata/tophat2_out/ERR127305/junctions.bed (188 bytes security) (deflated 75%)
  adding: extdata/tophat2_out/ERR127305/logs/ (208 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127305/logs/bam_merge_um.log (188 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127305/logs/bowtie.left_kept_reads.log (188 bytes security) (deflated 35%)
  adding: extdata/tophat2_out/ERR127305/logs/bowtie.left_kept_reads_seg1.log (188 bytes security) (deflated 35%)
  adding: extdata/tophat2_out/ERR127305/logs/bowtie.left_kept_reads_seg2.log (188 bytes security) (deflated 35%)
  adding: extdata/tophat2_out/ERR127305/logs/bowtie.left_kept_reads_seg3.log (188 bytes security) (deflated 35%)
  adding: extdata/tophat2_out/ERR127305/logs/bowtie.right_kept_reads.log (188 bytes security) (deflated 35%)
  adding: extdata/tophat2_out/ERR127305/logs/bowtie.right_kept_reads_seg1.log (188 bytes security) (deflated 34%)
  adding: extdata/tophat2_out/ERR127305/logs/bowtie.right_kept_reads_seg2.log (188 bytes security) (deflated 35%)
  adding: extdata/tophat2_out/ERR127305/logs/bowtie.right_kept_reads_seg3.log (188 bytes security) (deflated 34%)
  adding: extdata/tophat2_out/ERR127305/logs/bowtie_build.log (188 bytes security) (deflated 84%)
  adding: extdata/tophat2_out/ERR127305/logs/juncs_db.log (188 bytes security) (deflated 86%)
  adding: extdata/tophat2_out/ERR127305/logs/long_spanning_reads.segs.log (188 bytes security) (deflated 48%)
  adding: extdata/tophat2_out/ERR127305/logs/prep_reads.log (188 bytes security) (deflated 43%)
  adding: extdata/tophat2_out/ERR127305/logs/reports.log (188 bytes security) (deflated 82%)
  adding: extdata/tophat2_out/ERR127305/logs/reports.merge_bam.log (188 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127305/logs/reports.samtools_sort.log0 (188 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127305/logs/reports.samtools_sort.log1 (188 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127305/logs/run.log (188 bytes security) (deflated 92%)
  adding: extdata/tophat2_out/ERR127305/logs/segment_juncs.log (188 bytes security) (deflated 84%)
  adding: extdata/tophat2_out/ERR127305/logs/tophat.log (188 bytes security) (deflated 72%)
  adding: extdata/tophat2_out/ERR127305/prep_reads.info (188 bytes security) (deflated 55%)
  adding: extdata/tophat2_out/ERR127306/ (208 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127306/deletions.bed (188 bytes security) (deflated 77%)
  adding: extdata/tophat2_out/ERR127306/insertions.bed (188 bytes security) (deflated 75%)
  adding: extdata/tophat2_out/ERR127306/junctions.bed (188 bytes security) (deflated 75%)
  adding: extdata/tophat2_out/ERR127306/logs/ (208 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127306/logs/bam_merge_um.log (188 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127306/logs/bowtie.left_kept_reads.log (188 bytes security) (deflated 34%)
  adding: extdata/tophat2_out/ERR127306/logs/bowtie.left_kept_reads_seg1.log (188 bytes security) (deflated 35%)
  adding: extdata/tophat2_out/ERR127306/logs/bowtie.left_kept_reads_seg2.log (188 bytes security) (deflated 35%)
  adding: extdata/tophat2_out/ERR127306/logs/bowtie.left_kept_reads_seg3.log (188 bytes security) (deflated 35%)
  adding: extdata/tophat2_out/ERR127306/logs/bowtie.right_kept_reads.log (188 bytes security) (deflated 35%)
  adding: extdata/tophat2_out/ERR127306/logs/bowtie.right_kept_reads_seg1.log (188 bytes security) (deflated 35%)
  adding: extdata/tophat2_out/ERR127306/logs/bowtie.right_kept_reads_seg2.log (188 bytes security) (deflated 34%)
  adding: extdata/tophat2_out/ERR127306/logs/bowtie.right_kept_reads_seg3.log (188 bytes security) (deflated 35%)
  adding: extdata/tophat2_out/ERR127306/logs/bowtie_build.log (188 bytes security) (deflated 84%)
  adding: extdata/tophat2_out/ERR127306/logs/juncs_db.log (188 bytes security) (deflated 86%)
  adding: extdata/tophat2_out/ERR127306/logs/long_spanning_reads.segs.log (188 bytes security) (deflated 48%)
  adding: extdata/tophat2_out/ERR127306/logs/prep_reads.log (188 bytes security) (deflated 44%)
  adding: extdata/tophat2_out/ERR127306/logs/reports.log (188 bytes security) (deflated 82%)
  adding: extdata/tophat2_out/ERR127306/logs/reports.merge_bam.log (188 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127306/logs/reports.samtools_sort.log0 (188 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127306/logs/reports.samtools_sort.log1 (188 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127306/logs/run.log (188 bytes security) (deflated 92%)
  adding: extdata/tophat2_out/ERR127306/logs/segment_juncs.log (188 bytes security) (deflated 84%)
  adding: extdata/tophat2_out/ERR127306/logs/tophat.log (188 bytes security) (deflated 71%)
  adding: extdata/tophat2_out/ERR127306/prep_reads.info (188 bytes security) (deflated 54%)
  adding: extdata/tophat2_out/ERR127307/ (208 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127307/deletions.bed (188 bytes security) (deflated 77%)
  adding: extdata/tophat2_out/ERR127307/insertions.bed (188 bytes security) (deflated 75%)
  adding: extdata/tophat2_out/ERR127307/junctions.bed (188 bytes security) (deflated 75%)
  adding: extdata/tophat2_out/ERR127307/logs/ (208 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127307/logs/bam_merge_um.log (188 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127307/logs/bowtie.left_kept_reads.log (188 bytes security) (deflated 35%)
  adding: extdata/tophat2_out/ERR127307/logs/bowtie.left_kept_reads_seg1.log (188 bytes security) (deflated 34%)
  adding: extdata/tophat2_out/ERR127307/logs/bowtie.left_kept_reads_seg2.log (188 bytes security) (deflated 35%)
  adding: extdata/tophat2_out/ERR127307/logs/bowtie.left_kept_reads_seg3.log (188 bytes security) (deflated 35%)
  adding: extdata/tophat2_out/ERR127307/logs/bowtie.right_kept_reads.log (188 bytes security) (deflated 34%)
  adding: extdata/tophat2_out/ERR127307/logs/bowtie.right_kept_reads_seg1.log (188 bytes security) (deflated 35%)
  adding: extdata/tophat2_out/ERR127307/logs/bowtie.right_kept_reads_seg2.log (188 bytes security) (deflated 36%)
  adding: extdata/tophat2_out/ERR127307/logs/bowtie.right_kept_reads_seg3.log (188 bytes security) (deflated 35%)
  adding: extdata/tophat2_out/ERR127307/logs/bowtie_build.log (188 bytes security) (deflated 84%)
  adding: extdata/tophat2_out/ERR127307/logs/juncs_db.log (188 bytes security) (deflated 86%)
  adding: extdata/tophat2_out/ERR127307/logs/long_spanning_reads.segs.log (188 bytes security) (deflated 48%)
  adding: extdata/tophat2_out/ERR127307/logs/prep_reads.log (188 bytes security) (deflated 43%)
  adding: extdata/tophat2_out/ERR127307/logs/reports.log (188 bytes security) (deflated 82%)
  adding: extdata/tophat2_out/ERR127307/logs/reports.merge_bam.log (188 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127307/logs/reports.samtools_sort.log0 (188 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127307/logs/reports.samtools_sort.log1 (188 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127307/logs/reports.samtools_sort.log2 (188 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127307/logs/reports.samtools_sort.log3 (188 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127307/logs/run.log (188 bytes security) (deflated 92%)
  adding: extdata/tophat2_out/ERR127307/logs/segment_juncs.log (188 bytes security) (deflated 84%)
  adding: extdata/tophat2_out/ERR127307/logs/tophat.log (188 bytes security) (deflated 72%)
  adding: extdata/tophat2_out/ERR127307/prep_reads.info (188 bytes security) (deflated 54%)
  adding: extdata/tophat2_out/ERR127308/ (208 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127308/deletions.bed (188 bytes security) (deflated 76%)
  adding: extdata/tophat2_out/ERR127308/insertions.bed (188 bytes security) (deflated 75%)
  adding: extdata/tophat2_out/ERR127308/junctions.bed (188 bytes security) (deflated 75%)
  adding: extdata/tophat2_out/ERR127308/logs/ (208 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127308/logs/bam_merge_um.log (188 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127308/logs/bowtie.left_kept_reads.log (188 bytes security) (deflated 35%)
  adding: extdata/tophat2_out/ERR127308/logs/bowtie.left_kept_reads_seg1.log (188 bytes security) (deflated 36%)
  adding: extdata/tophat2_out/ERR127308/logs/bowtie.left_kept_reads_seg2.log (188 bytes security) (deflated 36%)
  adding: extdata/tophat2_out/ERR127308/logs/bowtie.left_kept_reads_seg3.log (188 bytes security) (deflated 35%)
  adding: extdata/tophat2_out/ERR127308/logs/bowtie.right_kept_reads.log (188 bytes security) (deflated 35%)
  adding: extdata/tophat2_out/ERR127308/logs/bowtie.right_kept_reads_seg1.log (188 bytes security) (deflated 34%)
  adding: extdata/tophat2_out/ERR127308/logs/bowtie.right_kept_reads_seg2.log (188 bytes security) (deflated 36%)
  adding: extdata/tophat2_out/ERR127308/logs/bowtie.right_kept_reads_seg3.log (188 bytes security) (deflated 36%)
  adding: extdata/tophat2_out/ERR127308/logs/bowtie_build.log (188 bytes security) (deflated 85%)
  adding: extdata/tophat2_out/ERR127308/logs/juncs_db.log (188 bytes security) (deflated 86%)
  adding: extdata/tophat2_out/ERR127308/logs/long_spanning_reads.segs.log (188 bytes security) (deflated 48%)
  adding: extdata/tophat2_out/ERR127308/logs/prep_reads.log (188 bytes security) (deflated 43%)
  adding: extdata/tophat2_out/ERR127308/logs/reports.log (188 bytes security) (deflated 82%)
  adding: extdata/tophat2_out/ERR127308/logs/reports.merge_bam.log (188 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127308/logs/reports.samtools_sort.log0 (188 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127308/logs/reports.samtools_sort.log1 (188 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127308/logs/run.log (188 bytes security) (deflated 92%)
  adding: extdata/tophat2_out/ERR127308/logs/segment_juncs.log (188 bytes security) (deflated 84%)
  adding: extdata/tophat2_out/ERR127308/logs/tophat.log (188 bytes security) (deflated 71%)
  adding: extdata/tophat2_out/ERR127308/prep_reads.info (188 bytes security) (deflated 55%)
  adding: extdata/tophat2_out/ERR127309/ (208 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127309/deletions.bed (188 bytes security) (deflated 77%)
  adding: extdata/tophat2_out/ERR127309/insertions.bed (188 bytes security) (deflated 75%)
  adding: extdata/tophat2_out/ERR127309/junctions.bed (188 bytes security) (deflated 75%)
  adding: extdata/tophat2_out/ERR127309/logs/ (208 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127309/logs/bam_merge_um.log (188 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127309/logs/bowtie.left_kept_reads.log (188 bytes security) (deflated 35%)
  adding: extdata/tophat2_out/ERR127309/logs/bowtie.left_kept_reads_seg1.log (188 bytes security) (deflated 35%)
  adding: extdata/tophat2_out/ERR127309/logs/bowtie.left_kept_reads_seg2.log (188 bytes security) (deflated 35%)
  adding: extdata/tophat2_out/ERR127309/logs/bowtie.left_kept_reads_seg3.log (188 bytes security) (deflated 34%)
  adding: extdata/tophat2_out/ERR127309/logs/bowtie.right_kept_reads.log (188 bytes security) (deflated 35%)
  adding: extdata/tophat2_out/ERR127309/logs/bowtie.right_kept_reads_seg1.log (188 bytes security) (deflated 37%)
  adding: extdata/tophat2_out/ERR127309/logs/bowtie.right_kept_reads_seg2.log (188 bytes security) (deflated 34%)
  adding: extdata/tophat2_out/ERR127309/logs/bowtie.right_kept_reads_seg3.log (188 bytes security) (deflated 34%)
  adding: extdata/tophat2_out/ERR127309/logs/bowtie_build.log (188 bytes security) (deflated 84%)
  adding: extdata/tophat2_out/ERR127309/logs/juncs_db.log (188 bytes security) (deflated 86%)
  adding: extdata/tophat2_out/ERR127309/logs/long_spanning_reads.segs.log (188 bytes security) (deflated 48%)
  adding: extdata/tophat2_out/ERR127309/logs/prep_reads.log (188 bytes security) (deflated 43%)
  adding: extdata/tophat2_out/ERR127309/logs/reports.log (188 bytes security) (deflated 82%)
  adding: extdata/tophat2_out/ERR127309/logs/reports.merge_bam.log (188 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127309/logs/reports.samtools_sort.log0 (188 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127309/logs/reports.samtools_sort.log1 (188 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127309/logs/run.log (188 bytes security) (deflated 92%)
  adding: extdata/tophat2_out/ERR127309/logs/segment_juncs.log (188 bytes security) (deflated 84%)
  adding: extdata/tophat2_out/ERR127309/logs/tophat.log (188 bytes security) (deflated 71%)
  adding: extdata/tophat2_out/ERR127309/prep_reads.info (188 bytes security) (deflated 55%)
  adding: help/ (208 bytes security) (stored 0%)
  adding: help/aliases.rds (188 bytes security) (stored 0%)
  adding: help/AnIndex (188 bytes security) (deflated 76%)
  adding: help/paths.rds (188 bytes security) (stored 0%)
  adding: help/RNAseqData.HNRNPC.bam.chr14.rdb (188 bytes security) (stored 0%)
  adding: help/RNAseqData.HNRNPC.bam.chr14.rdx (188 bytes security) (stored 0%)
  adding: html/ (208 bytes security) (stored 0%)
  adding: html/00Index.html (188 bytes security) (deflated 70%)
  adding: html/R.css (188 bytes security) (deflated 75%)
  adding: INDEX (188 bytes security) (deflated 44%)
  adding: MD5 (188 bytes security) (deflated 74%)
  adding: Meta/ (208 bytes security) (stored 0%)
  adding: Meta/hsearch.rds (188 bytes security) (stored 0%)
  adding: Meta/links.rds (188 bytes security) (stored 0%)
  adding: Meta/nsInfo.rds (188 bytes security) (stored 0%)
  adding: Meta/package.rds (188 bytes security) (stored 0%)
  adding: Meta/Rd.rds (188 bytes security) (stored 0%)
  adding: NAMESPACE (188 bytes security) (deflated 33%)
  adding: R/ (208 bytes security) (stored 0%)
  adding: R/RNAseqData.HNRNPC.bam.chr14 (188 bytes security) (deflated 41%)
  adding: R/RNAseqData.HNRNPC.bam.chr14.rdb (188 bytes security) (deflated 21%)
  adding: R/RNAseqData.HNRNPC.bam.chr14.rdx (188 bytes security) (stored 0%)
  adding: scripts/ (208 bytes security) (stored 0%)
  adding: scripts/download-fastq.sh (188 bytes security) (deflated 43%)
  adding: scripts/hg19_seqnames.txt (188 bytes security) (deflated 76%)
  adding: scripts/README.TXT (188 bytes security) (deflated 61%)
  adding: scripts/start-tophat2-on-all-runs.sh (188 bytes security) (deflated 79%)
  adding: scripts/subset_bam_chr14.R (188 bytes security) (deflated 52%)