BioC experimental data: CHECK report for cMap2data on zin1

Package: cMap2data

Version: 1.9.0

Command: /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings cMap2data_1.9.0.tar.gz

StartedAt: 2016-09-17 11:25:32 -0700 (Sat, 17 Sep 2016)

EndedAt: 2016-09-17 11:26:07 -0700 (Sat, 17 Sep 2016)

EllapsedTime: 35.2 seconds

RetCode: 0

Status:  OK

CheckDir: cMap2data.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings cMap2data_1.9.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.4-data-experiment/meat/cMap2data.Rcheck’
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘cMap2data/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘cMap2data’ version ‘1.9.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘cMap2data’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 41.4Mb
  sub-directories of 1Mb or more:
    data  41.2Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... NOTE
prepare_Rd: cMap2data-package.Rd:35-37: Dropping empty section \seealso
prepare_Rd: druglabels.Rd:11-13: Dropping empty section \details
prepare_Rd: genelist.Rd:14-16: Dropping empty section \source
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.4-data-experiment/meat/cMap2data.Rcheck/00check.log’
for details.

* installing *source* package ‘cMap2data’ ...
** data
*** moving datasets to lazyload DB
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (cMap2data)

name	user	system	elapsed
cMap2data-package	0.012	0.000	0.014
cytodrug	0.000	0.000	0.002
drugClusters	0.000	0.000	0.001
drugRL	0.004	0.000	0.001
druglabels	0.000	0.000	0.001
genelist	0.004	0.000	0.001