BioC experimental data: BUILD report for curatedBreastData on zin1

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### Running command:
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###   /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data curatedBreastData
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* checking for file ‘curatedBreastData/DESCRIPTION’ ... OK
* preparing ‘curatedBreastData’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: ggplot2
Loading required package: impute
Loading required package: XML
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport,
    clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply,
    parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame,
    cbind, colnames, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, lengths, mapply, match, mget, order, paste,
    pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff,
    sort, table, tapply, union, unique, unsplit, which, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with 'browseVignettes()'. To
    cite Bioconductor, see 'citation("Biobase")', and for packages
    'citation("pkgname")'.

Loading required package: BiocStyle

Analyzing dataset 1 or dataset named study_1379_GPL1223_all
Warning in filterAndImputeSamples(study, studyName = "study", outputFile = paste0(outputFileDirectory,  :
  
Just a warning: this function assumes your missing values
  are proper NAs, not "null",etc.

Warning in collapseDupProbes(expr = exprSet@assayData$exprs, sampleColNames = colnames(exprSet@assayData$exprs),  :
  It's best to impute NA values before running this function
otherwise it may set averages to NA if there is 1 NA present.
This function just removes any genes whose key is NA.
Warning in collapseDupProbes(expr = exprSet@assayData$exprs, sampleColNames = colnames(exprSet@assayData$exprs),  :
  
You may get a warning here because key names are duplicated 
  so it can't use them as row names. That's OK.


Error: processing vignette 'curatedBreastData-manual.Rnw' failed with diagnostics:
 chunk 4 
Error in .validate_assayDataElementReplace(obj, value) : 
  object and replacement value have different dimensions
Execution halted
BioC experimental data: BUILD report for curatedBreastData on zin1

Summary

Command output
