Back to the "Build/check report"

BioC experimental data: CHECK report for geneLenDataBase on zin1

This page was generated on 2016-09-17 20:14:55 -0700 (Sat, 17 Sep 2016).

Package 114/304HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
geneLenDataBase 1.9.0
Nadia Davidson , Anthony Hawkins
Snapshot Date: 2016-09-17 09:20:18 -0700 (Sat, 17 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/geneLenDataBase
Last Changed Rev: 3763 / Revision: 3889
Last Changed Date: 2016-05-03 14:48:02 -0700 (Tue, 03 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  OK [ ERROR ]

Summary

Package: geneLenDataBase
Version: 1.9.0
Command: /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings geneLenDataBase_1.9.0.tar.gz
StartedAt: 2016-09-17 11:41:30 -0700 (Sat, 17 Sep 2016)
EndedAt: 2016-09-17 11:46:32 -0700 (Sat, 17 Sep 2016)
EllapsedTime: 302.3 seconds
RetCode: 1
Status:  ERROR 
CheckDir: geneLenDataBase.Rcheck
Warnings: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings geneLenDataBase_1.9.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.4-data-experiment/meat/geneLenDataBase.Rcheck’
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘geneLenDataBase/DESCRIPTION’ ... OK
* this is package ‘geneLenDataBase’ version ‘1.9.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘geneLenDataBase’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 100.3Mb
  sub-directories of 1Mb or more:
    data  99.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
':::' call which should be '::': ‘GenomicFeatures:::supportedUCSCtables’
  See the note in ?`:::` about the use of this operator.
Unexported object imported by a ':::' call: ‘GenomicFeatures:::.UCSC_TXNAME2GENEID_MAPDEFS’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'anoCar1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'aplCal1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'braFlo1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeJap1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.nscanPasaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGeneOld3.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'loxAfr3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'petMar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'priPac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

See section 'Cross-references' in the 'Writing R Extensions' manual.

* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... ERROR
Running examples in ‘geneLenDataBase-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: supportedGeneIDs
> ### Title: Supported Gene IDs
> ### Aliases: supportedGeneIDs
> 
> ### ** Examples
> 
> supportedGeneIDs()
Error in `[<-.data.frame`(`*tmp*`, nrow(base) + 1, , value = c("geneSymbol",  : 
  replacement has 4 items, need 5
Calls: supportedGeneIDs -> [<- -> [<-.data.frame
Execution halted
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR, 1 WARNING, 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.4-data-experiment/meat/geneLenDataBase.Rcheck/00check.log’
for details.

geneLenDataBase.Rcheck/00install.out:

* installing *source* package ‘geneLenDataBase’ ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (geneLenDataBase)

geneLenDataBase.Rcheck/geneLenDataBase-Ex.timings:

nameusersystemelapsed
anoCar1.ensGene.LENGTH0.0960.0200.113
anoCar1.genscan.LENGTH0.0640.0480.111
anoCar1.xenoRefGene.LENGTH1.0840.0121.097
anoGam1.ensGene.LENGTH0.3920.0200.413
anoGam1.geneid.LENGTH0.0480.0160.066
anoGam1.genscan.LENGTH0.0560.0040.060
apiMel1.genscan.LENGTH0.0440.0080.053
apiMel2.ensGene.LENGTH0.1160.0040.120
apiMel2.geneid.LENGTH0.0480.0280.073
apiMel2.genscan.LENGTH0.0400.0080.048
aplCal1.xenoRefGene.LENGTH0.5520.0000.551
bosTau2.geneSymbol.LENGTH0.0600.0240.084
bosTau2.geneid.LENGTH0.8840.0680.952
bosTau2.genscan.LENGTH0.1080.0040.114
bosTau2.refGene.LENGTH0.0560.0280.084
bosTau2.sgpGene.LENGTH0.1280.0000.129
bosTau3.ensGene.LENGTH0.1600.0200.178
bosTau3.geneSymbol.LENGTH0.0520.0160.070
bosTau3.geneid.LENGTH0.1960.0080.207
bosTau3.genscan.LENGTH0.0880.0000.089
bosTau3.refGene.LENGTH0.0600.0120.071
bosTau3.sgpGene.LENGTH0.1040.0280.134
bosTau4.ensGene.LENGTH0.2640.0080.272
bosTau4.geneSymbol.LENGTH0.0680.0000.069
bosTau4.genscan.LENGTH0.10.00.1
bosTau4.nscanGene.LENGTH0.0400.0080.051
bosTau4.refGene.LENGTH0.0520.0120.067
braFlo1.xenoRefGene.LENGTH1.0040.0001.004
caeJap1.xenoRefGene.LENGTH0.5160.0040.520
caePb1.xenoRefGene.LENGTH0.6680.0000.669
caePb2.xenoRefGene.LENGTH0.7480.0000.747
caeRem2.xenoRefGene.LENGTH0.6160.0000.616
caeRem3.xenoRefGene.LENGTH0.5760.0040.581
calJac1.genscan.LENGTH0.1040.0160.122
calJac1.nscanGene.LENGTH0.1880.0000.188
calJac1.xenoRefGene.LENGTH1.0360.0001.039
canFam1.ensGene.LENGTH0.1800.0000.181
canFam1.geneSymbol.LENGTH0.0040.0040.008
canFam1.genscan.LENGTH0.0680.0040.071
canFam1.nscanGene.LENGTH0.0680.0000.067
canFam1.refGene.LENGTH0.0080.0000.007
canFam1.xenoRefGene.LENGTH1.0720.0041.075
canFam2.ensGene.LENGTH0.1160.0080.122
canFam2.geneSymbol.LENGTH0.0080.0000.008
canFam2.genscan.LENGTH0.0600.0080.067
canFam2.nscanGene.LENGTH0.0800.0000.077
canFam2.refGene.LENGTH0.0080.0000.008
canFam2.xenoRefGene.LENGTH0.9080.0000.909
cavPor3.ensGene.LENGTH0.1440.0120.159
cavPor3.genscan.LENGTH0.1160.0640.181
cavPor3.nscanGene.LENGTH0.1480.0280.174
cavPor3.xenoRefGene.LENGTH0.9840.0000.985
cb1.xenoRefGene.LENGTH0.6680.0000.668
cb3.xenoRefGene.LENGTH0.5760.0000.577
ce2.geneSymbol.LENGTH0.0800.0440.122
ce2.geneid.LENGTH0.0760.0000.075
ce2.refGene.LENGTH0.0960.0280.122
ce4.geneSymbol.LENGTH0.1040.0160.120
ce4.refGene.LENGTH0.0760.0360.112
ce4.xenoRefGene.LENGTH0.1320.0000.131
ce6.ensGene.LENGTH0.1240.0080.130
ce6.geneSymbol.LENGTH0.1000.0280.129
ce6.refGene.LENGTH0.2120.0760.289
ce6.xenoRefGene.LENGTH0.1240.0000.125
ci1.geneSymbol.LENGTH0.0080.0000.009
ci1.refGene.LENGTH0.0040.0040.009
ci1.xenoRefGene.LENGTH0.30.00.3
ci2.ensGene.LENGTH0.0880.0040.093
ci2.geneSymbol.LENGTH0.0080.0040.009
ci2.refGene.LENGTH0.0080.0000.008
ci2.xenoRefGene.LENGTH0.4760.0000.474
danRer3.ensGene.LENGTH0.2000.0040.203
danRer3.geneSymbol.LENGTH0.1040.0080.114
danRer3.refGene.LENGTH0.0880.0200.110
danRer4.ensGene.LENGTH0.2000.0040.201
danRer4.geneSymbol.LENGTH0.0960.0600.156
danRer4.genscan.LENGTH0.1560.0040.158
danRer4.nscanGene.LENGTH0.1160.0200.137
danRer4.refGene.LENGTH0.0880.0160.103
danRer5.ensGene.LENGTH0.1880.0000.186
danRer5.geneSymbol.LENGTH0.0800.0120.092
danRer5.refGene.LENGTH0.0880.0120.097
danRer5.vegaGene.LENGTH0.0600.0200.079
danRer5.vegaPseudoGene.LENGTH0.0040.0000.004
danRer6.ensGene.LENGTH0.2080.0120.220
danRer6.geneSymbol.LENGTH0.0760.0120.088
danRer6.refGene.LENGTH0.0600.0160.078
danRer6.xenoRefGene.LENGTH0.7960.0000.793
dm1.geneSymbol.LENGTH0.0760.0360.112
dm1.genscan.LENGTH0.0320.0120.043
dm1.refGene.LENGTH0.0880.0200.108
dm2.geneSymbol.LENGTH0.2480.0080.253
dm2.geneid.LENGTH0.1480.1040.251
dm2.genscan.LENGTH0.0280.0120.041
dm2.nscanGene.LENGTH0.120.000.12
dm2.refGene.LENGTH0.0880.0200.109
dm3.geneSymbol.LENGTH0.1600.0040.165
dm3.nscanPasaGene.LENGTH0.0680.0200.088
dm3.refGene.LENGTH0.0720.0000.073
dp2.genscan.LENGTH0.5360.0120.546
dp2.xenoRefGene.LENGTH0.260.000.26
dp3.geneid.LENGTH0.0560.0080.064
dp3.genscan.LENGTH0.0320.0080.041
dp3.xenoRefGene.LENGTH0.1480.0240.171
droAna1.geneid.LENGTH0.0760.0000.075
droAna1.genscan.LENGTH0.0240.0000.025
droAna1.xenoRefGene.LENGTH0.3000.0040.306
droAna2.genscan.LENGTH0.0560.0000.054
droAna2.xenoRefGene.LENGTH0.4160.0000.415
droEre1.genscan.LENGTH0.0360.0080.045
droEre1.xenoRefGene.LENGTH0.4600.0120.471
droGri1.genscan.LENGTH0.040.020.06
droGri1.xenoRefGene.LENGTH0.4320.0000.432
droMoj1.geneid.LENGTH0.1480.0040.151
droMoj1.genscan.LENGTH0.0600.0000.062
droMoj1.xenoRefGene.LENGTH0.4320.0160.449
droMoj2.genscan.LENGTH0.0560.0000.057
droMoj2.xenoRefGene.LENGTH0.420.000.42
droPer1.genscan.LENGTH0.0520.0080.061
droPer1.xenoRefGene.LENGTH0.4040.0040.405
droSec1.genscan.LENGTH0.0320.0160.048
droSec1.xenoRefGene.LENGTH0.4640.0000.463
droSim1.geneid.LENGTH0.0400.0240.065
droSim1.genscan.LENGTH0.0320.0080.039
droSim1.xenoRefGene.LENGTH0.2200.0000.221
droVir1.geneid.LENGTH0.1800.0000.177
droVir1.genscan.LENGTH0.0600.0000.061
droVir1.xenoRefGene.LENGTH0.2480.0040.249
droVir2.genscan.LENGTH0.0440.0080.051
droVir2.xenoRefGene.LENGTH0.3480.0080.357
droYak1.geneid.LENGTH0.0560.0200.076
droYak1.genscan.LENGTH0.0360.0080.047
droYak1.xenoRefGene.LENGTH0.680.000.68
droYak2.genscan.LENGTH0.0320.0120.044
droYak2.xenoRefGene.LENGTH0.3840.0000.382
equCab1.geneSymbol.LENGTH0.0080.0000.008
equCab1.geneid.LENGTH0.0920.0120.105
equCab1.nscanGene.LENGTH0.0520.0120.066
equCab1.refGene.LENGTH0.0080.0000.008
equCab1.sgpGene.LENGTH0.0760.0040.081
equCab2.ensGene.LENGTH0.1000.0120.110
equCab2.geneSymbol.LENGTH0.0040.0040.010
equCab2.nscanGene.LENGTH0.0680.0080.077
equCab2.refGene.LENGTH0.0080.0000.009
equCab2.xenoRefGene.LENGTH0.6360.0080.646
felCat3.ensGene.LENGTH0.1200.0000.118
felCat3.geneSymbol.LENGTH0.0000.0040.005
felCat3.geneid.LENGTH1.1240.0001.126
felCat3.genscan.LENGTH0.1440.0320.174
felCat3.nscanGene.LENGTH0.1000.0760.174
felCat3.refGene.LENGTH0.0080.0000.007
felCat3.sgpGene.LENGTH0.1480.0720.222
felCat3.xenoRefGene.LENGTH2.3560.0162.371
fr1.ensGene.LENGTH0.1040.0080.111
fr1.genscan.LENGTH0.0640.0000.064
fr2.ensGene.LENGTH0.1840.0120.197
galGal2.ensGene.LENGTH0.0720.0000.074
galGal2.geneSymbol.LENGTH0.0280.0000.028
galGal2.geneid.LENGTH0.0360.0320.069
galGal2.genscan.LENGTH0.0720.0120.085
galGal2.refGene.LENGTH0.0240.0040.027
galGal2.sgpGene.LENGTH0.0440.0280.075
galGal3.ensGene.LENGTH0.1120.0040.118
galGal3.geneSymbol.LENGTH0.0240.0040.027
galGal3.genscan.LENGTH0.0680.0120.078
galGal3.nscanGene.LENGTH0.1640.0040.166
galGal3.refGene.LENGTH0.0240.0000.025
galGal3.xenoRefGene.LENGTH0.8000.0000.801
gasAcu1.ensGene.LENGTH0.1480.0040.153
gasAcu1.nscanGene.LENGTH0.1200.0160.137
hg16.acembly.LENGTH0.5760.0000.576
hg16.ensGene.LENGTH0.6520.0080.657
hg16.exoniphy.LENGTH0.2400.0000.242
hg16.geneSymbol.LENGTH0.1480.0040.153
hg16.geneid.LENGTH0.0520.0280.081
hg16.genscan.LENGTH0.0800.0000.094
hg16.knownGene.LENGTH0.1760.0080.185
hg16.refGene.LENGTH0.1280.0040.132
hg16.sgpGene.LENGTH0.0680.0040.070
hg17.acembly.LENGTH0.5880.0000.587
hg17.acescan.LENGTH0.0120.0040.014
hg17.ccdsGene.LENGTH0.0200.0120.034
hg17.ensGene.LENGTH0.1280.0080.136
hg17.exoniphy.LENGTH0.5720.0000.572
hg17.geneSymbol.LENGTH0.1520.0000.152
hg17.geneid.LENGTH0.0960.0120.106
hg17.genscan.LENGTH0.0720.0080.081
hg17.knownGene.LENGTH0.1640.0080.174
hg17.refGene.LENGTH0.1360.0120.146
hg17.sgpGene.LENGTH0.0960.0040.098
hg17.vegaGene.LENGTH0.0600.0120.070
hg17.vegaPseudoGene.LENGTH0.0200.0080.029
hg17.xenoRefGene.LENGTH0.3560.0040.360
hg18.acembly.LENGTH0.7320.0040.732
hg18.acescan.LENGTH0.0160.0000.016
hg18.ccdsGene.LENGTH0.0520.0000.053
hg18.ensGene.LENGTH0.6000.0040.601
hg18.exoniphy.LENGTH0.5720.0000.571
hg18.geneSymbol.LENGTH0.1480.0680.217
hg18.geneid.LENGTH0.1080.0080.116
hg18.genscan.LENGTH0.0840.0040.089
hg18.knownGene.LENGTH0.3040.0040.309
hg18.knownGeneOld3.LENGTH0.0920.0080.101
hg18.refGene.LENGTH0.1560.0080.161
hg18.sgpGene.LENGTH0.1120.0080.119
hg18.sibGene.LENGTH1.3320.0041.338
hg18.xenoRefGene.LENGTH0.540.000.54
hg19.ccdsGene.LENGTH0.0560.0120.068
hg19.ensGene.LENGTH0.4760.0040.480
hg19.exoniphy.LENGTH0.5400.0000.543
hg19.geneSymbol.LENGTH0.2720.0080.280
hg19.knownGene.LENGTH0.2200.0160.237
hg19.nscanGene.LENGTH0.1800.0000.183
hg19.refGene.LENGTH0.1480.0040.152
hg19.xenoRefGene.LENGTH0.5480.0040.554
loxAfr3.xenoRefGene.LENGTH1.1040.0001.106
mm7.ensGene.LENGTH0.7080.0000.705
mm7.geneSymbol.LENGTH0.1080.0000.109
mm7.geneid.LENGTH0.1000.0040.103
mm7.genscan.LENGTH0.0640.0000.066
mm7.knownGene.LENGTH0.1160.0040.118
mm7.refGene.LENGTH0.1120.0000.113
mm7.sgpGene.LENGTH0.0760.0160.090
mm7.xenoRefGene.LENGTH0.3800.0000.381
mm8.ccdsGene.LENGTH0.0200.0120.035
mm8.ensGene.LENGTH0.0760.0080.087
mm8.geneSymbol.LENGTH0.0920.0000.092
mm8.geneid.LENGTH0.0880.0080.095
mm8.genscan.LENGTH0.0680.0000.068
mm8.knownGene.LENGTH0.1080.0000.105
mm8.nscanGene.LENGTH0.0640.0000.064
mm8.refGene.LENGTH0.1040.0000.103
mm8.sgpGene.LENGTH0.0840.0120.098
mm8.sibGene.LENGTH0.3880.0040.398
mm8.xenoRefGene.LENGTH0.4680.0120.477
mm9.acembly.LENGTH0.4200.0000.419
mm9.ccdsGene.LENGTH0.0400.0040.046
mm9.ensGene.LENGTH0.2320.0120.246
mm9.exoniphy.LENGTH0.6160.0000.615
mm9.geneSymbol.LENGTH0.3400.0000.342
mm9.geneid.LENGTH0.1000.0120.111
mm9.genscan.LENGTH0.0720.0040.075
mm9.knownGene.LENGTH0.1240.0160.141
mm9.nscanGene.LENGTH0.0600.0000.062
mm9.refGene.LENGTH0.0840.0000.085
mm9.sgpGene.LENGTH0.0920.0080.099
mm9.xenoRefGene.LENGTH0.4800.0240.504
monDom1.genscan.LENGTH0.1600.0000.159
monDom4.ensGene.LENGTH0.0840.0080.091
monDom4.geneSymbol.LENGTH0.0040.0000.005
monDom4.genscan.LENGTH0.0560.0280.086
monDom4.nscanGene.LENGTH0.0800.0200.097
monDom4.refGene.LENGTH0.0000.0040.005
monDom4.xenoRefGene.LENGTH0.5400.0040.542
monDom5.ensGene.LENGTH0.6280.0000.627
monDom5.geneSymbol.LENGTH0.0040.0000.005
monDom5.genscan.LENGTH0.0480.0040.055
monDom5.nscanGene.LENGTH0.1080.0000.106
monDom5.refGene.LENGTH0.0040.0000.005
monDom5.xenoRefGene.LENGTH0.6600.0000.668
ornAna1.ensGene.LENGTH0.1000.0160.115
ornAna1.geneSymbol.LENGTH0.0000.0000.003
ornAna1.refGene.LENGTH0.0040.0000.004
ornAna1.xenoRefGene.LENGTH0.5160.0000.517
oryLat2.ensGene.LENGTH0.0840.0080.089
oryLat2.geneSymbol.LENGTH0.0040.0000.005
oryLat2.refGene.LENGTH0.0080.0000.006
oryLat2.xenoRefGene.LENGTH0.5680.0000.568
panTro1.ensGene.LENGTH0.1920.0040.196
panTro1.geneid.LENGTH0.0600.0120.074
panTro1.genscan.LENGTH0.0680.0000.065
panTro1.xenoRefGene.LENGTH0.1360.0040.147
panTro2.ensGene.LENGTH0.1200.0080.131
panTro2.geneSymbol.LENGTH0.1000.0040.105
panTro2.genscan.LENGTH0.0680.0000.065
panTro2.nscanGene.LENGTH0.0600.0040.066
panTro2.refGene.LENGTH0.1080.0040.108
panTro2.xenoRefGene.LENGTH0.5720.0000.572
petMar1.xenoRefGene.LENGTH0.3720.0000.371
ponAbe2.ensGene.LENGTH0.0880.0160.103
ponAbe2.geneSymbol.LENGTH0.0160.0040.018
ponAbe2.genscan.LENGTH0.0680.0000.068
ponAbe2.nscanGene.LENGTH0.0680.0000.067
ponAbe2.refGene.LENGTH0.0120.0040.017
ponAbe2.xenoRefGene.LENGTH0.7760.0000.776
priPac1.xenoRefGene.LENGTH0.5560.0000.558
rheMac2.ensGene.LENGTH0.1440.0120.155
rheMac2.geneSymbol.LENGTH0.0040.0040.007
rheMac2.geneid.LENGTH0.0840.0000.086
rheMac2.nscanGene.LENGTH0.0640.0000.065
rheMac2.refGene.LENGTH0.0000.0040.008
rheMac2.sgpGene.LENGTH0.0840.0000.084
rheMac2.xenoRefGene.LENGTH0.6280.0040.633
rn3.ensGene.LENGTH0.1080.0200.127
rn3.geneSymbol.LENGTH0.0640.0200.081
rn3.geneid.LENGTH0.1520.0040.158
rn3.genscan.LENGTH0.0720.0000.075
rn3.knownGene.LENGTH0.0360.0000.037
rn3.nscanGene.LENGTH0.0680.0000.066
rn3.refGene.LENGTH0.0520.0280.079
rn3.sgpGene.LENGTH0.0560.0080.066
rn3.xenoRefGene.LENGTH0.6120.0040.617
rn4.ensGene.LENGTH0.5840.0000.583
rn4.geneSymbol.LENGTH0.0520.0200.073
rn4.geneid.LENGTH0.0960.0080.104
rn4.genscan.LENGTH0.0600.0040.065
rn4.knownGene.LENGTH0.0320.0000.035
rn4.nscanGene.LENGTH0.0640.0160.084
rn4.refGene.LENGTH0.0440.0240.070
rn4.sgpGene.LENGTH0.0720.0240.095
rn4.xenoRefGene.LENGTH0.3480.0000.345
sacCer1.ensGene.LENGTH0.0240.0040.030
sacCer2.ensGene.LENGTH0.0280.0000.029
strPur1.geneSymbol.LENGTH0.0080.0000.007
strPur1.genscan.LENGTH0.0680.0000.067
strPur1.refGene.LENGTH0.0080.0000.006
strPur1.xenoRefGene.LENGTH0.4920.0120.506
strPur2.geneSymbol.LENGTH0.0040.0000.005
strPur2.genscan.LENGTH0.1040.0000.103
strPur2.refGene.LENGTH0.0080.0000.006
strPur2.xenoRefGene.LENGTH0.7880.0000.798