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This page was generated on 2016-09-17 20:14:55 -0700 (Sat, 17 Sep 2016).
Package 114/304 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | |||||
geneLenDataBase 1.9.0 Nadia Davidson
| zin1 | Linux (Ubuntu 16.04 LTS) / x86_64 | NotNeeded | OK | [ ERROR ] |
Package: geneLenDataBase |
Version: 1.9.0 |
Command: /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings geneLenDataBase_1.9.0.tar.gz |
StartedAt: 2016-09-17 11:41:30 -0700 (Sat, 17 Sep 2016) |
EndedAt: 2016-09-17 11:46:32 -0700 (Sat, 17 Sep 2016) |
EllapsedTime: 302.3 seconds |
RetCode: 1 |
Status: ERROR |
CheckDir: geneLenDataBase.Rcheck |
Warnings: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings geneLenDataBase_1.9.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.4-data-experiment/meat/geneLenDataBase.Rcheck’ * using R version 3.3.1 (2016-06-21) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘geneLenDataBase/DESCRIPTION’ ... OK * this is package ‘geneLenDataBase’ version ‘1.9.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘geneLenDataBase’ can be installed ... OK * checking installed package size ... NOTE installed size is 100.3Mb sub-directories of 1Mb or more: data 99.7Mb * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE ':::' call which should be '::': ‘GenomicFeatures:::supportedUCSCtables’ See the note in ?`:::` about the use of this operator. Unexported object imported by a ':::' call: ‘GenomicFeatures:::.UCSC_TXNAME2GENEID_MAPDEFS’ See the note in ?`:::` about the use of this operator. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... WARNING Missing link or links in documentation object 'anoCar1.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'anoCar1.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'anoCar1.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'anoGam1.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'anoGam1.geneid.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'anoGam1.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'apiMel1.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'apiMel2.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'apiMel2.geneid.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'apiMel2.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'aplCal1.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'bosTau2.geneSymbol.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'bosTau2.geneid.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'bosTau2.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'bosTau2.refGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'bosTau2.sgpGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'bosTau3.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'bosTau3.geneSymbol.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'bosTau3.geneid.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'bosTau3.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'bosTau3.refGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'bosTau3.sgpGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'bosTau4.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'bosTau4.geneSymbol.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'bosTau4.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'bosTau4.nscanGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'bosTau4.refGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'braFlo1.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'caeJap1.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'caePb1.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'caePb2.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'caeRem2.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'caeRem3.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'calJac1.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'calJac1.nscanGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'calJac1.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'canFam1.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'canFam1.geneSymbol.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'canFam1.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'canFam1.nscanGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'canFam1.refGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'canFam1.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'canFam2.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'canFam2.geneSymbol.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'canFam2.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'canFam2.nscanGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'canFam2.refGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'canFam2.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'cavPor3.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'cavPor3.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'cavPor3.nscanGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'cavPor3.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'cb1.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'cb3.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'ce2.geneSymbol.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'ce2.geneid.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'ce2.refGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'ce4.geneSymbol.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'ce4.refGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'ce4.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'ce6.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'ce6.geneSymbol.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'ce6.refGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'ce6.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'ci1.geneSymbol.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'ci1.refGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'ci1.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'ci2.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'ci2.geneSymbol.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'ci2.refGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'ci2.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'danRer3.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'danRer3.geneSymbol.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'danRer3.refGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'danRer4.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'danRer4.geneSymbol.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'danRer4.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'danRer4.nscanGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'danRer4.refGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'danRer5.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'danRer5.geneSymbol.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'danRer5.refGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'danRer5.vegaGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'danRer5.vegaPseudoGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'danRer6.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'danRer6.geneSymbol.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'danRer6.refGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'danRer6.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'dm1.geneSymbol.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'dm1.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'dm1.refGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'dm2.geneSymbol.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'dm2.geneid.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'dm2.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'dm2.nscanGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'dm2.refGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'dm3.geneSymbol.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'dm3.nscanPasaGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'dm3.refGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'dp2.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'dp2.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'dp3.geneid.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'dp3.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'dp3.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'droAna1.geneid.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'droAna1.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'droAna1.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'droAna2.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'droAna2.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'droEre1.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'droEre1.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'droGri1.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'droGri1.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'droMoj1.geneid.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'droMoj1.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'droMoj1.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'droMoj2.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'droMoj2.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'droPer1.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'droPer1.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'droSec1.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'droSec1.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'droSim1.geneid.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'droSim1.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'droSim1.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'droVir1.geneid.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'droVir1.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'droVir1.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'droVir2.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'droVir2.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'droYak1.geneid.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'droYak1.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'droYak1.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'droYak2.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'droYak2.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'equCab1.geneSymbol.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'equCab1.geneid.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'equCab1.nscanGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'equCab1.refGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'equCab1.sgpGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'equCab2.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'equCab2.geneSymbol.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'equCab2.nscanGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'equCab2.refGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'equCab2.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'felCat3.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'felCat3.geneSymbol.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'felCat3.geneid.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'felCat3.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'felCat3.nscanGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'felCat3.refGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'felCat3.sgpGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'felCat3.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'fr1.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'fr1.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'fr2.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'galGal2.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'galGal2.geneSymbol.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'galGal2.geneid.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'galGal2.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'galGal2.refGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'galGal2.sgpGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'galGal3.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'galGal3.geneSymbol.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'galGal3.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'galGal3.nscanGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'galGal3.refGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'galGal3.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'gasAcu1.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'gasAcu1.nscanGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg16.acembly.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg16.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg16.exoniphy.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg16.geneSymbol.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg16.geneid.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg16.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg16.knownGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg16.refGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg16.sgpGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg17.acembly.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg17.acescan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg17.ccdsGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg17.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg17.exoniphy.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg17.geneSymbol.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg17.geneid.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg17.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg17.knownGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg17.refGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg17.sgpGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg17.vegaGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg17.vegaPseudoGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg17.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg18.acembly.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg18.acescan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg18.ccdsGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg18.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg18.exoniphy.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg18.geneSymbol.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg18.geneid.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg18.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg18.knownGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg18.knownGeneOld3.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg18.refGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg18.sgpGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg18.sibGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg18.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg19.ccdsGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg19.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg19.exoniphy.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg19.geneSymbol.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg19.knownGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg19.nscanGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg19.refGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'hg19.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'loxAfr3.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'mm7.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'mm7.geneSymbol.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'mm7.geneid.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'mm7.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'mm7.knownGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'mm7.refGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'mm7.sgpGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'mm7.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'mm8.ccdsGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'mm8.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'mm8.geneSymbol.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'mm8.geneid.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'mm8.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'mm8.knownGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'mm8.nscanGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'mm8.refGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'mm8.sgpGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'mm8.sibGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'mm8.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'mm9.acembly.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'mm9.ccdsGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'mm9.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'mm9.exoniphy.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'mm9.geneSymbol.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'mm9.geneid.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'mm9.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'mm9.knownGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'mm9.nscanGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'mm9.refGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'mm9.sgpGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'mm9.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'monDom1.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'monDom4.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'monDom4.geneSymbol.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'monDom4.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'monDom4.nscanGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'monDom4.refGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'monDom4.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'monDom5.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'monDom5.geneSymbol.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'monDom5.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'monDom5.nscanGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'monDom5.refGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'monDom5.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'ornAna1.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'ornAna1.geneSymbol.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'ornAna1.refGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'ornAna1.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'oryLat2.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'oryLat2.geneSymbol.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'oryLat2.refGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'oryLat2.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'panTro1.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'panTro1.geneid.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'panTro1.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'panTro1.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'panTro2.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'panTro2.geneSymbol.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'panTro2.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'panTro2.nscanGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'panTro2.refGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'panTro2.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'petMar1.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'ponAbe2.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'ponAbe2.geneSymbol.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'ponAbe2.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'ponAbe2.nscanGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'ponAbe2.refGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'ponAbe2.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'priPac1.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'rheMac2.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'rheMac2.geneSymbol.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'rheMac2.geneid.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'rheMac2.nscanGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'rheMac2.refGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'rheMac2.sgpGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'rheMac2.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'rn3.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'rn3.geneSymbol.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'rn3.geneid.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'rn3.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'rn3.knownGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'rn3.nscanGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'rn3.refGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'rn3.sgpGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'rn3.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'rn4.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'rn4.geneSymbol.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'rn4.geneid.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'rn4.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'rn4.knownGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'rn4.nscanGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'rn4.refGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'rn4.sgpGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'rn4.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'sacCer1.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'sacCer2.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'strPur1.geneSymbol.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'strPur1.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'strPur1.refGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'strPur1.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'strPur2.geneSymbol.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'strPur2.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'strPur2.refGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'strPur2.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'taeGut1.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'taeGut1.geneSymbol.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'taeGut1.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'taeGut1.nscanGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'taeGut1.refGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'taeGut1.xenoRefGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'tetNig1.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'tetNig1.geneid.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'tetNig1.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'tetNig1.nscanGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'tetNig2.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'xenTro1.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'xenTro2.ensGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'xenTro2.geneSymbol.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'xenTro2.genscan.LENGTH.Rd': ‘downloadLengthFromUCSC’ Missing link or links in documentation object 'xenTro2.refGene.LENGTH.Rd': ‘downloadLengthFromUCSC’ See section 'Cross-references' in the 'Writing R Extensions' manual. * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... ERROR Running examples in ‘geneLenDataBase-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: supportedGeneIDs > ### Title: Supported Gene IDs > ### Aliases: supportedGeneIDs > > ### ** Examples > > supportedGeneIDs() Error in `[<-.data.frame`(`*tmp*`, nrow(base) + 1, , value = c("geneSymbol", : replacement has 4 items, need 5 Calls: supportedGeneIDs -> [<- -> [<-.data.frame Execution halted * checking PDF version of manual ... OK * DONE Status: 1 ERROR, 1 WARNING, 3 NOTEs See ‘/home/biocbuild/bbs-3.4-data-experiment/meat/geneLenDataBase.Rcheck/00check.log’ for details.
geneLenDataBase.Rcheck/00install.out:
* installing *source* package ‘geneLenDataBase’ ... ** R ** data ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (geneLenDataBase)
geneLenDataBase.Rcheck/geneLenDataBase-Ex.timings:
name | user | system | elapsed | |
anoCar1.ensGene.LENGTH | 0.096 | 0.020 | 0.113 | |
anoCar1.genscan.LENGTH | 0.064 | 0.048 | 0.111 | |
anoCar1.xenoRefGene.LENGTH | 1.084 | 0.012 | 1.097 | |
anoGam1.ensGene.LENGTH | 0.392 | 0.020 | 0.413 | |
anoGam1.geneid.LENGTH | 0.048 | 0.016 | 0.066 | |
anoGam1.genscan.LENGTH | 0.056 | 0.004 | 0.060 | |
apiMel1.genscan.LENGTH | 0.044 | 0.008 | 0.053 | |
apiMel2.ensGene.LENGTH | 0.116 | 0.004 | 0.120 | |
apiMel2.geneid.LENGTH | 0.048 | 0.028 | 0.073 | |
apiMel2.genscan.LENGTH | 0.040 | 0.008 | 0.048 | |
aplCal1.xenoRefGene.LENGTH | 0.552 | 0.000 | 0.551 | |
bosTau2.geneSymbol.LENGTH | 0.060 | 0.024 | 0.084 | |
bosTau2.geneid.LENGTH | 0.884 | 0.068 | 0.952 | |
bosTau2.genscan.LENGTH | 0.108 | 0.004 | 0.114 | |
bosTau2.refGene.LENGTH | 0.056 | 0.028 | 0.084 | |
bosTau2.sgpGene.LENGTH | 0.128 | 0.000 | 0.129 | |
bosTau3.ensGene.LENGTH | 0.160 | 0.020 | 0.178 | |
bosTau3.geneSymbol.LENGTH | 0.052 | 0.016 | 0.070 | |
bosTau3.geneid.LENGTH | 0.196 | 0.008 | 0.207 | |
bosTau3.genscan.LENGTH | 0.088 | 0.000 | 0.089 | |
bosTau3.refGene.LENGTH | 0.060 | 0.012 | 0.071 | |
bosTau3.sgpGene.LENGTH | 0.104 | 0.028 | 0.134 | |
bosTau4.ensGene.LENGTH | 0.264 | 0.008 | 0.272 | |
bosTau4.geneSymbol.LENGTH | 0.068 | 0.000 | 0.069 | |
bosTau4.genscan.LENGTH | 0.1 | 0.0 | 0.1 | |
bosTau4.nscanGene.LENGTH | 0.040 | 0.008 | 0.051 | |
bosTau4.refGene.LENGTH | 0.052 | 0.012 | 0.067 | |
braFlo1.xenoRefGene.LENGTH | 1.004 | 0.000 | 1.004 | |
caeJap1.xenoRefGene.LENGTH | 0.516 | 0.004 | 0.520 | |
caePb1.xenoRefGene.LENGTH | 0.668 | 0.000 | 0.669 | |
caePb2.xenoRefGene.LENGTH | 0.748 | 0.000 | 0.747 | |
caeRem2.xenoRefGene.LENGTH | 0.616 | 0.000 | 0.616 | |
caeRem3.xenoRefGene.LENGTH | 0.576 | 0.004 | 0.581 | |
calJac1.genscan.LENGTH | 0.104 | 0.016 | 0.122 | |
calJac1.nscanGene.LENGTH | 0.188 | 0.000 | 0.188 | |
calJac1.xenoRefGene.LENGTH | 1.036 | 0.000 | 1.039 | |
canFam1.ensGene.LENGTH | 0.180 | 0.000 | 0.181 | |
canFam1.geneSymbol.LENGTH | 0.004 | 0.004 | 0.008 | |
canFam1.genscan.LENGTH | 0.068 | 0.004 | 0.071 | |
canFam1.nscanGene.LENGTH | 0.068 | 0.000 | 0.067 | |
canFam1.refGene.LENGTH | 0.008 | 0.000 | 0.007 | |
canFam1.xenoRefGene.LENGTH | 1.072 | 0.004 | 1.075 | |
canFam2.ensGene.LENGTH | 0.116 | 0.008 | 0.122 | |
canFam2.geneSymbol.LENGTH | 0.008 | 0.000 | 0.008 | |
canFam2.genscan.LENGTH | 0.060 | 0.008 | 0.067 | |
canFam2.nscanGene.LENGTH | 0.080 | 0.000 | 0.077 | |
canFam2.refGene.LENGTH | 0.008 | 0.000 | 0.008 | |
canFam2.xenoRefGene.LENGTH | 0.908 | 0.000 | 0.909 | |
cavPor3.ensGene.LENGTH | 0.144 | 0.012 | 0.159 | |
cavPor3.genscan.LENGTH | 0.116 | 0.064 | 0.181 | |
cavPor3.nscanGene.LENGTH | 0.148 | 0.028 | 0.174 | |
cavPor3.xenoRefGene.LENGTH | 0.984 | 0.000 | 0.985 | |
cb1.xenoRefGene.LENGTH | 0.668 | 0.000 | 0.668 | |
cb3.xenoRefGene.LENGTH | 0.576 | 0.000 | 0.577 | |
ce2.geneSymbol.LENGTH | 0.080 | 0.044 | 0.122 | |
ce2.geneid.LENGTH | 0.076 | 0.000 | 0.075 | |
ce2.refGene.LENGTH | 0.096 | 0.028 | 0.122 | |
ce4.geneSymbol.LENGTH | 0.104 | 0.016 | 0.120 | |
ce4.refGene.LENGTH | 0.076 | 0.036 | 0.112 | |
ce4.xenoRefGene.LENGTH | 0.132 | 0.000 | 0.131 | |
ce6.ensGene.LENGTH | 0.124 | 0.008 | 0.130 | |
ce6.geneSymbol.LENGTH | 0.100 | 0.028 | 0.129 | |
ce6.refGene.LENGTH | 0.212 | 0.076 | 0.289 | |
ce6.xenoRefGene.LENGTH | 0.124 | 0.000 | 0.125 | |
ci1.geneSymbol.LENGTH | 0.008 | 0.000 | 0.009 | |
ci1.refGene.LENGTH | 0.004 | 0.004 | 0.009 | |
ci1.xenoRefGene.LENGTH | 0.3 | 0.0 | 0.3 | |
ci2.ensGene.LENGTH | 0.088 | 0.004 | 0.093 | |
ci2.geneSymbol.LENGTH | 0.008 | 0.004 | 0.009 | |
ci2.refGene.LENGTH | 0.008 | 0.000 | 0.008 | |
ci2.xenoRefGene.LENGTH | 0.476 | 0.000 | 0.474 | |
danRer3.ensGene.LENGTH | 0.200 | 0.004 | 0.203 | |
danRer3.geneSymbol.LENGTH | 0.104 | 0.008 | 0.114 | |
danRer3.refGene.LENGTH | 0.088 | 0.020 | 0.110 | |
danRer4.ensGene.LENGTH | 0.200 | 0.004 | 0.201 | |
danRer4.geneSymbol.LENGTH | 0.096 | 0.060 | 0.156 | |
danRer4.genscan.LENGTH | 0.156 | 0.004 | 0.158 | |
danRer4.nscanGene.LENGTH | 0.116 | 0.020 | 0.137 | |
danRer4.refGene.LENGTH | 0.088 | 0.016 | 0.103 | |
danRer5.ensGene.LENGTH | 0.188 | 0.000 | 0.186 | |
danRer5.geneSymbol.LENGTH | 0.080 | 0.012 | 0.092 | |
danRer5.refGene.LENGTH | 0.088 | 0.012 | 0.097 | |
danRer5.vegaGene.LENGTH | 0.060 | 0.020 | 0.079 | |
danRer5.vegaPseudoGene.LENGTH | 0.004 | 0.000 | 0.004 | |
danRer6.ensGene.LENGTH | 0.208 | 0.012 | 0.220 | |
danRer6.geneSymbol.LENGTH | 0.076 | 0.012 | 0.088 | |
danRer6.refGene.LENGTH | 0.060 | 0.016 | 0.078 | |
danRer6.xenoRefGene.LENGTH | 0.796 | 0.000 | 0.793 | |
dm1.geneSymbol.LENGTH | 0.076 | 0.036 | 0.112 | |
dm1.genscan.LENGTH | 0.032 | 0.012 | 0.043 | |
dm1.refGene.LENGTH | 0.088 | 0.020 | 0.108 | |
dm2.geneSymbol.LENGTH | 0.248 | 0.008 | 0.253 | |
dm2.geneid.LENGTH | 0.148 | 0.104 | 0.251 | |
dm2.genscan.LENGTH | 0.028 | 0.012 | 0.041 | |
dm2.nscanGene.LENGTH | 0.12 | 0.00 | 0.12 | |
dm2.refGene.LENGTH | 0.088 | 0.020 | 0.109 | |
dm3.geneSymbol.LENGTH | 0.160 | 0.004 | 0.165 | |
dm3.nscanPasaGene.LENGTH | 0.068 | 0.020 | 0.088 | |
dm3.refGene.LENGTH | 0.072 | 0.000 | 0.073 | |
dp2.genscan.LENGTH | 0.536 | 0.012 | 0.546 | |
dp2.xenoRefGene.LENGTH | 0.26 | 0.00 | 0.26 | |
dp3.geneid.LENGTH | 0.056 | 0.008 | 0.064 | |
dp3.genscan.LENGTH | 0.032 | 0.008 | 0.041 | |
dp3.xenoRefGene.LENGTH | 0.148 | 0.024 | 0.171 | |
droAna1.geneid.LENGTH | 0.076 | 0.000 | 0.075 | |
droAna1.genscan.LENGTH | 0.024 | 0.000 | 0.025 | |
droAna1.xenoRefGene.LENGTH | 0.300 | 0.004 | 0.306 | |
droAna2.genscan.LENGTH | 0.056 | 0.000 | 0.054 | |
droAna2.xenoRefGene.LENGTH | 0.416 | 0.000 | 0.415 | |
droEre1.genscan.LENGTH | 0.036 | 0.008 | 0.045 | |
droEre1.xenoRefGene.LENGTH | 0.460 | 0.012 | 0.471 | |
droGri1.genscan.LENGTH | 0.04 | 0.02 | 0.06 | |
droGri1.xenoRefGene.LENGTH | 0.432 | 0.000 | 0.432 | |
droMoj1.geneid.LENGTH | 0.148 | 0.004 | 0.151 | |
droMoj1.genscan.LENGTH | 0.060 | 0.000 | 0.062 | |
droMoj1.xenoRefGene.LENGTH | 0.432 | 0.016 | 0.449 | |
droMoj2.genscan.LENGTH | 0.056 | 0.000 | 0.057 | |
droMoj2.xenoRefGene.LENGTH | 0.42 | 0.00 | 0.42 | |
droPer1.genscan.LENGTH | 0.052 | 0.008 | 0.061 | |
droPer1.xenoRefGene.LENGTH | 0.404 | 0.004 | 0.405 | |
droSec1.genscan.LENGTH | 0.032 | 0.016 | 0.048 | |
droSec1.xenoRefGene.LENGTH | 0.464 | 0.000 | 0.463 | |
droSim1.geneid.LENGTH | 0.040 | 0.024 | 0.065 | |
droSim1.genscan.LENGTH | 0.032 | 0.008 | 0.039 | |
droSim1.xenoRefGene.LENGTH | 0.220 | 0.000 | 0.221 | |
droVir1.geneid.LENGTH | 0.180 | 0.000 | 0.177 | |
droVir1.genscan.LENGTH | 0.060 | 0.000 | 0.061 | |
droVir1.xenoRefGene.LENGTH | 0.248 | 0.004 | 0.249 | |
droVir2.genscan.LENGTH | 0.044 | 0.008 | 0.051 | |
droVir2.xenoRefGene.LENGTH | 0.348 | 0.008 | 0.357 | |
droYak1.geneid.LENGTH | 0.056 | 0.020 | 0.076 | |
droYak1.genscan.LENGTH | 0.036 | 0.008 | 0.047 | |
droYak1.xenoRefGene.LENGTH | 0.68 | 0.00 | 0.68 | |
droYak2.genscan.LENGTH | 0.032 | 0.012 | 0.044 | |
droYak2.xenoRefGene.LENGTH | 0.384 | 0.000 | 0.382 | |
equCab1.geneSymbol.LENGTH | 0.008 | 0.000 | 0.008 | |
equCab1.geneid.LENGTH | 0.092 | 0.012 | 0.105 | |
equCab1.nscanGene.LENGTH | 0.052 | 0.012 | 0.066 | |
equCab1.refGene.LENGTH | 0.008 | 0.000 | 0.008 | |
equCab1.sgpGene.LENGTH | 0.076 | 0.004 | 0.081 | |
equCab2.ensGene.LENGTH | 0.100 | 0.012 | 0.110 | |
equCab2.geneSymbol.LENGTH | 0.004 | 0.004 | 0.010 | |
equCab2.nscanGene.LENGTH | 0.068 | 0.008 | 0.077 | |
equCab2.refGene.LENGTH | 0.008 | 0.000 | 0.009 | |
equCab2.xenoRefGene.LENGTH | 0.636 | 0.008 | 0.646 | |
felCat3.ensGene.LENGTH | 0.120 | 0.000 | 0.118 | |
felCat3.geneSymbol.LENGTH | 0.000 | 0.004 | 0.005 | |
felCat3.geneid.LENGTH | 1.124 | 0.000 | 1.126 | |
felCat3.genscan.LENGTH | 0.144 | 0.032 | 0.174 | |
felCat3.nscanGene.LENGTH | 0.100 | 0.076 | 0.174 | |
felCat3.refGene.LENGTH | 0.008 | 0.000 | 0.007 | |
felCat3.sgpGene.LENGTH | 0.148 | 0.072 | 0.222 | |
felCat3.xenoRefGene.LENGTH | 2.356 | 0.016 | 2.371 | |
fr1.ensGene.LENGTH | 0.104 | 0.008 | 0.111 | |
fr1.genscan.LENGTH | 0.064 | 0.000 | 0.064 | |
fr2.ensGene.LENGTH | 0.184 | 0.012 | 0.197 | |
galGal2.ensGene.LENGTH | 0.072 | 0.000 | 0.074 | |
galGal2.geneSymbol.LENGTH | 0.028 | 0.000 | 0.028 | |
galGal2.geneid.LENGTH | 0.036 | 0.032 | 0.069 | |
galGal2.genscan.LENGTH | 0.072 | 0.012 | 0.085 | |
galGal2.refGene.LENGTH | 0.024 | 0.004 | 0.027 | |
galGal2.sgpGene.LENGTH | 0.044 | 0.028 | 0.075 | |
galGal3.ensGene.LENGTH | 0.112 | 0.004 | 0.118 | |
galGal3.geneSymbol.LENGTH | 0.024 | 0.004 | 0.027 | |
galGal3.genscan.LENGTH | 0.068 | 0.012 | 0.078 | |
galGal3.nscanGene.LENGTH | 0.164 | 0.004 | 0.166 | |
galGal3.refGene.LENGTH | 0.024 | 0.000 | 0.025 | |
galGal3.xenoRefGene.LENGTH | 0.800 | 0.000 | 0.801 | |
gasAcu1.ensGene.LENGTH | 0.148 | 0.004 | 0.153 | |
gasAcu1.nscanGene.LENGTH | 0.120 | 0.016 | 0.137 | |
hg16.acembly.LENGTH | 0.576 | 0.000 | 0.576 | |
hg16.ensGene.LENGTH | 0.652 | 0.008 | 0.657 | |
hg16.exoniphy.LENGTH | 0.240 | 0.000 | 0.242 | |
hg16.geneSymbol.LENGTH | 0.148 | 0.004 | 0.153 | |
hg16.geneid.LENGTH | 0.052 | 0.028 | 0.081 | |
hg16.genscan.LENGTH | 0.080 | 0.000 | 0.094 | |
hg16.knownGene.LENGTH | 0.176 | 0.008 | 0.185 | |
hg16.refGene.LENGTH | 0.128 | 0.004 | 0.132 | |
hg16.sgpGene.LENGTH | 0.068 | 0.004 | 0.070 | |
hg17.acembly.LENGTH | 0.588 | 0.000 | 0.587 | |
hg17.acescan.LENGTH | 0.012 | 0.004 | 0.014 | |
hg17.ccdsGene.LENGTH | 0.020 | 0.012 | 0.034 | |
hg17.ensGene.LENGTH | 0.128 | 0.008 | 0.136 | |
hg17.exoniphy.LENGTH | 0.572 | 0.000 | 0.572 | |
hg17.geneSymbol.LENGTH | 0.152 | 0.000 | 0.152 | |
hg17.geneid.LENGTH | 0.096 | 0.012 | 0.106 | |
hg17.genscan.LENGTH | 0.072 | 0.008 | 0.081 | |
hg17.knownGene.LENGTH | 0.164 | 0.008 | 0.174 | |
hg17.refGene.LENGTH | 0.136 | 0.012 | 0.146 | |
hg17.sgpGene.LENGTH | 0.096 | 0.004 | 0.098 | |
hg17.vegaGene.LENGTH | 0.060 | 0.012 | 0.070 | |
hg17.vegaPseudoGene.LENGTH | 0.020 | 0.008 | 0.029 | |
hg17.xenoRefGene.LENGTH | 0.356 | 0.004 | 0.360 | |
hg18.acembly.LENGTH | 0.732 | 0.004 | 0.732 | |
hg18.acescan.LENGTH | 0.016 | 0.000 | 0.016 | |
hg18.ccdsGene.LENGTH | 0.052 | 0.000 | 0.053 | |
hg18.ensGene.LENGTH | 0.600 | 0.004 | 0.601 | |
hg18.exoniphy.LENGTH | 0.572 | 0.000 | 0.571 | |
hg18.geneSymbol.LENGTH | 0.148 | 0.068 | 0.217 | |
hg18.geneid.LENGTH | 0.108 | 0.008 | 0.116 | |
hg18.genscan.LENGTH | 0.084 | 0.004 | 0.089 | |
hg18.knownGene.LENGTH | 0.304 | 0.004 | 0.309 | |
hg18.knownGeneOld3.LENGTH | 0.092 | 0.008 | 0.101 | |
hg18.refGene.LENGTH | 0.156 | 0.008 | 0.161 | |
hg18.sgpGene.LENGTH | 0.112 | 0.008 | 0.119 | |
hg18.sibGene.LENGTH | 1.332 | 0.004 | 1.338 | |
hg18.xenoRefGene.LENGTH | 0.54 | 0.00 | 0.54 | |
hg19.ccdsGene.LENGTH | 0.056 | 0.012 | 0.068 | |
hg19.ensGene.LENGTH | 0.476 | 0.004 | 0.480 | |
hg19.exoniphy.LENGTH | 0.540 | 0.000 | 0.543 | |
hg19.geneSymbol.LENGTH | 0.272 | 0.008 | 0.280 | |
hg19.knownGene.LENGTH | 0.220 | 0.016 | 0.237 | |
hg19.nscanGene.LENGTH | 0.180 | 0.000 | 0.183 | |
hg19.refGene.LENGTH | 0.148 | 0.004 | 0.152 | |
hg19.xenoRefGene.LENGTH | 0.548 | 0.004 | 0.554 | |
loxAfr3.xenoRefGene.LENGTH | 1.104 | 0.000 | 1.106 | |
mm7.ensGene.LENGTH | 0.708 | 0.000 | 0.705 | |
mm7.geneSymbol.LENGTH | 0.108 | 0.000 | 0.109 | |
mm7.geneid.LENGTH | 0.100 | 0.004 | 0.103 | |
mm7.genscan.LENGTH | 0.064 | 0.000 | 0.066 | |
mm7.knownGene.LENGTH | 0.116 | 0.004 | 0.118 | |
mm7.refGene.LENGTH | 0.112 | 0.000 | 0.113 | |
mm7.sgpGene.LENGTH | 0.076 | 0.016 | 0.090 | |
mm7.xenoRefGene.LENGTH | 0.380 | 0.000 | 0.381 | |
mm8.ccdsGene.LENGTH | 0.020 | 0.012 | 0.035 | |
mm8.ensGene.LENGTH | 0.076 | 0.008 | 0.087 | |
mm8.geneSymbol.LENGTH | 0.092 | 0.000 | 0.092 | |
mm8.geneid.LENGTH | 0.088 | 0.008 | 0.095 | |
mm8.genscan.LENGTH | 0.068 | 0.000 | 0.068 | |
mm8.knownGene.LENGTH | 0.108 | 0.000 | 0.105 | |
mm8.nscanGene.LENGTH | 0.064 | 0.000 | 0.064 | |
mm8.refGene.LENGTH | 0.104 | 0.000 | 0.103 | |
mm8.sgpGene.LENGTH | 0.084 | 0.012 | 0.098 | |
mm8.sibGene.LENGTH | 0.388 | 0.004 | 0.398 | |
mm8.xenoRefGene.LENGTH | 0.468 | 0.012 | 0.477 | |
mm9.acembly.LENGTH | 0.420 | 0.000 | 0.419 | |
mm9.ccdsGene.LENGTH | 0.040 | 0.004 | 0.046 | |
mm9.ensGene.LENGTH | 0.232 | 0.012 | 0.246 | |
mm9.exoniphy.LENGTH | 0.616 | 0.000 | 0.615 | |
mm9.geneSymbol.LENGTH | 0.340 | 0.000 | 0.342 | |
mm9.geneid.LENGTH | 0.100 | 0.012 | 0.111 | |
mm9.genscan.LENGTH | 0.072 | 0.004 | 0.075 | |
mm9.knownGene.LENGTH | 0.124 | 0.016 | 0.141 | |
mm9.nscanGene.LENGTH | 0.060 | 0.000 | 0.062 | |
mm9.refGene.LENGTH | 0.084 | 0.000 | 0.085 | |
mm9.sgpGene.LENGTH | 0.092 | 0.008 | 0.099 | |
mm9.xenoRefGene.LENGTH | 0.480 | 0.024 | 0.504 | |
monDom1.genscan.LENGTH | 0.160 | 0.000 | 0.159 | |
monDom4.ensGene.LENGTH | 0.084 | 0.008 | 0.091 | |
monDom4.geneSymbol.LENGTH | 0.004 | 0.000 | 0.005 | |
monDom4.genscan.LENGTH | 0.056 | 0.028 | 0.086 | |
monDom4.nscanGene.LENGTH | 0.080 | 0.020 | 0.097 | |
monDom4.refGene.LENGTH | 0.000 | 0.004 | 0.005 | |
monDom4.xenoRefGene.LENGTH | 0.540 | 0.004 | 0.542 | |
monDom5.ensGene.LENGTH | 0.628 | 0.000 | 0.627 | |
monDom5.geneSymbol.LENGTH | 0.004 | 0.000 | 0.005 | |
monDom5.genscan.LENGTH | 0.048 | 0.004 | 0.055 | |
monDom5.nscanGene.LENGTH | 0.108 | 0.000 | 0.106 | |
monDom5.refGene.LENGTH | 0.004 | 0.000 | 0.005 | |
monDom5.xenoRefGene.LENGTH | 0.660 | 0.000 | 0.668 | |
ornAna1.ensGene.LENGTH | 0.100 | 0.016 | 0.115 | |
ornAna1.geneSymbol.LENGTH | 0.000 | 0.000 | 0.003 | |
ornAna1.refGene.LENGTH | 0.004 | 0.000 | 0.004 | |
ornAna1.xenoRefGene.LENGTH | 0.516 | 0.000 | 0.517 | |
oryLat2.ensGene.LENGTH | 0.084 | 0.008 | 0.089 | |
oryLat2.geneSymbol.LENGTH | 0.004 | 0.000 | 0.005 | |
oryLat2.refGene.LENGTH | 0.008 | 0.000 | 0.006 | |
oryLat2.xenoRefGene.LENGTH | 0.568 | 0.000 | 0.568 | |
panTro1.ensGene.LENGTH | 0.192 | 0.004 | 0.196 | |
panTro1.geneid.LENGTH | 0.060 | 0.012 | 0.074 | |
panTro1.genscan.LENGTH | 0.068 | 0.000 | 0.065 | |
panTro1.xenoRefGene.LENGTH | 0.136 | 0.004 | 0.147 | |
panTro2.ensGene.LENGTH | 0.120 | 0.008 | 0.131 | |
panTro2.geneSymbol.LENGTH | 0.100 | 0.004 | 0.105 | |
panTro2.genscan.LENGTH | 0.068 | 0.000 | 0.065 | |
panTro2.nscanGene.LENGTH | 0.060 | 0.004 | 0.066 | |
panTro2.refGene.LENGTH | 0.108 | 0.004 | 0.108 | |
panTro2.xenoRefGene.LENGTH | 0.572 | 0.000 | 0.572 | |
petMar1.xenoRefGene.LENGTH | 0.372 | 0.000 | 0.371 | |
ponAbe2.ensGene.LENGTH | 0.088 | 0.016 | 0.103 | |
ponAbe2.geneSymbol.LENGTH | 0.016 | 0.004 | 0.018 | |
ponAbe2.genscan.LENGTH | 0.068 | 0.000 | 0.068 | |
ponAbe2.nscanGene.LENGTH | 0.068 | 0.000 | 0.067 | |
ponAbe2.refGene.LENGTH | 0.012 | 0.004 | 0.017 | |
ponAbe2.xenoRefGene.LENGTH | 0.776 | 0.000 | 0.776 | |
priPac1.xenoRefGene.LENGTH | 0.556 | 0.000 | 0.558 | |
rheMac2.ensGene.LENGTH | 0.144 | 0.012 | 0.155 | |
rheMac2.geneSymbol.LENGTH | 0.004 | 0.004 | 0.007 | |
rheMac2.geneid.LENGTH | 0.084 | 0.000 | 0.086 | |
rheMac2.nscanGene.LENGTH | 0.064 | 0.000 | 0.065 | |
rheMac2.refGene.LENGTH | 0.000 | 0.004 | 0.008 | |
rheMac2.sgpGene.LENGTH | 0.084 | 0.000 | 0.084 | |
rheMac2.xenoRefGene.LENGTH | 0.628 | 0.004 | 0.633 | |
rn3.ensGene.LENGTH | 0.108 | 0.020 | 0.127 | |
rn3.geneSymbol.LENGTH | 0.064 | 0.020 | 0.081 | |
rn3.geneid.LENGTH | 0.152 | 0.004 | 0.158 | |
rn3.genscan.LENGTH | 0.072 | 0.000 | 0.075 | |
rn3.knownGene.LENGTH | 0.036 | 0.000 | 0.037 | |
rn3.nscanGene.LENGTH | 0.068 | 0.000 | 0.066 | |
rn3.refGene.LENGTH | 0.052 | 0.028 | 0.079 | |
rn3.sgpGene.LENGTH | 0.056 | 0.008 | 0.066 | |
rn3.xenoRefGene.LENGTH | 0.612 | 0.004 | 0.617 | |
rn4.ensGene.LENGTH | 0.584 | 0.000 | 0.583 | |
rn4.geneSymbol.LENGTH | 0.052 | 0.020 | 0.073 | |
rn4.geneid.LENGTH | 0.096 | 0.008 | 0.104 | |
rn4.genscan.LENGTH | 0.060 | 0.004 | 0.065 | |
rn4.knownGene.LENGTH | 0.032 | 0.000 | 0.035 | |
rn4.nscanGene.LENGTH | 0.064 | 0.016 | 0.084 | |
rn4.refGene.LENGTH | 0.044 | 0.024 | 0.070 | |
rn4.sgpGene.LENGTH | 0.072 | 0.024 | 0.095 | |
rn4.xenoRefGene.LENGTH | 0.348 | 0.000 | 0.345 | |
sacCer1.ensGene.LENGTH | 0.024 | 0.004 | 0.030 | |
sacCer2.ensGene.LENGTH | 0.028 | 0.000 | 0.029 | |
strPur1.geneSymbol.LENGTH | 0.008 | 0.000 | 0.007 | |
strPur1.genscan.LENGTH | 0.068 | 0.000 | 0.067 | |
strPur1.refGene.LENGTH | 0.008 | 0.000 | 0.006 | |
strPur1.xenoRefGene.LENGTH | 0.492 | 0.012 | 0.506 | |
strPur2.geneSymbol.LENGTH | 0.004 | 0.000 | 0.005 | |
strPur2.genscan.LENGTH | 0.104 | 0.000 | 0.103 | |
strPur2.refGene.LENGTH | 0.008 | 0.000 | 0.006 | |
strPur2.xenoRefGene.LENGTH | 0.788 | 0.000 | 0.798 | |