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BioC experimental data: CHECK report for SomatiCAData on malbec1

This page was generated on 2017-04-15 16:49:35 -0400 (Sat, 15 Apr 2017).

Package 279/310HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SomatiCAData 1.12.0
Mengjie Chen
Snapshot Date: 2017-04-15 09:20:05 -0400 (Sat, 15 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_4/experiment/pkgs/SomatiCAData
Last Changed Rev: 3958 / Revision: 4141
Last Changed Date: 2016-10-17 14:47:53 -0400 (Mon, 17 Oct 2016)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK [ WARNINGS ]UNNEEDED, same version exists in internal repository

Summary

Package: SomatiCAData
Version: 1.12.0
Command: /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings SomatiCAData_1.12.0.tar.gz
StartedAt: 2017-04-15 11:20:18 -0400 (Sat, 15 Apr 2017)
EndedAt: 2017-04-15 11:22:43 -0400 (Sat, 15 Apr 2017)
EllapsedTime: 144.9 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: SomatiCAData.Rcheck
Warnings: 2

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings SomatiCAData_1.12.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.4-data-experiment/meat/SomatiCAData.Rcheck’
* using R version 3.3.3 (2017-03-06)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SomatiCAData/DESCRIPTION’ ... OK
* this is package ‘SomatiCAData’ version ‘1.12.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SomatiCAData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 32.2Mb
  sub-directories of 1Mb or more:
    data  32.1Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Subdirectory ‘inst’ contains no files.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
           old_size new_size compress
  glio.rda   32.4Mb   18.9Mb       xz
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.4-data-experiment/meat/SomatiCAData.Rcheck/00check.log’
for details.


SomatiCAData.Rcheck/00install.out:

* installing *source* package ‘SomatiCAData’ ...
** R
** data
*** moving datasets to lazyload DB
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (SomatiCAData)

SomatiCAData.Rcheck/SomatiCAData-Ex.timings:

nameusersystemelapsed
SomatiCAData-package0.0120.0000.013