Back to the "Build/check report"

BioC experimental data: CHECK report for breastCancerMAINZ on malbec1

This page was generated on 2017-04-15 16:49:30 -0400 (Sat, 15 Apr 2017).

Package 25/310HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
breastCancerMAINZ 1.12.0
Markus Schroeder , Benjamin Haibe-Kains
Snapshot Date: 2017-04-15 09:20:05 -0400 (Sat, 15 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_4/experiment/pkgs/breastCancerMAINZ
Last Changed Rev: 3958 / Revision: 4141
Last Changed Date: 2016-10-17 14:47:53 -0400 (Mon, 17 Oct 2016)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK [ WARNINGS ]UNNEEDED, same version exists in internal repository

Summary

Package: breastCancerMAINZ
Version: 1.12.0
Command: /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings breastCancerMAINZ_1.12.0.tar.gz
StartedAt: 2017-04-15 10:42:12 -0400 (Sat, 15 Apr 2017)
EndedAt: 2017-04-15 10:43:04 -0400 (Sat, 15 Apr 2017)
EllapsedTime: 51.3 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: breastCancerMAINZ.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings breastCancerMAINZ_1.12.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.4-data-experiment/meat/breastCancerMAINZ.Rcheck’
* using R version 3.3.3 (2017-03-06)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘breastCancerMAINZ/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘breastCancerMAINZ’ version ‘1.12.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘breastCancerMAINZ’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 34.9Mb
  sub-directories of 1Mb or more:
    data  34.8Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
            old_size new_size compress
  mainz.rda   34.8Mb   31.2Mb       xz
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.4-data-experiment/meat/breastCancerMAINZ.Rcheck/00check.log’
for details.


breastCancerMAINZ.Rcheck/00install.out:

* installing *source* package ‘breastCancerMAINZ’ ...
** data
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (breastCancerMAINZ)

breastCancerMAINZ.Rcheck/breastCancerMAINZ-Ex.timings:

nameusersystemelapsed
mainz1.1280.0161.146