Back to the "Build/check report"

BioC experimental data: BUILD report for estrogen on zin1

This page was generated on 2016-09-17 20:14:51 -0700 (Sat, 17 Sep 2016).

Package 88/304HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
estrogen 1.19.0
R. Gentleman
Snapshot Date: 2016-09-17 09:20:18 -0700 (Sat, 17 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/estrogen
Last Changed Rev: 3763 / Revision: 3889
Last Changed Date: 2016-05-03 14:48:02 -0700 (Tue, 03 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded [ ERROR ] skipped 

Summary

Package: estrogen
Version: 1.19.0
Command: /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data estrogen
StartedAt: 2016-09-17 10:03:28 -0700 (Sat, 17 Sep 2016)
EndedAt: 2016-09-17 10:04:36 -0700 (Sat, 17 Sep 2016)
EllapsedTime: 68.2 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data estrogen
###
##############################################################################
##############################################################################


* checking for file ‘estrogen/DESCRIPTION’ ... OK
* preparing ‘estrogen’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit, which, which.max, which.min

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Warning: replacing previous import ‘AnnotationDbi::tail’ by ‘utils::tail’ when loading ‘hgu95av2cdf’
Warning: replacing previous import ‘AnnotationDbi::head’ by ‘utils::head’ when loading ‘hgu95av2cdf’


Error: processing vignette 'estrogen.Rnw' failed with diagnostics:
 chunk 17 (label = boxplotb) 
Error in (function (od, vd)  : 
  object and replacement value dimnames differ
Execution halted