BioC experimental data: CHECK report for geuvPack on zin1

Package: geuvPack

Version: 1.5.0

Command: /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings geuvPack_1.5.0.tar.gz

StartedAt: 2016-09-17 11:42:21 -0700 (Sat, 17 Sep 2016)

EndedAt: 2016-09-17 11:44:37 -0700 (Sat, 17 Sep 2016)

EllapsedTime: 135.7 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: geuvPack.Rcheck

Warnings: 1

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### Running command:
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###   /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings geuvPack_1.5.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.4-data-experiment/meat/geuvPack.Rcheck’
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘geuvPack/DESCRIPTION’ ... OK
* this is package ‘geuvPack’ version ‘1.5.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘geuvPack’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 92.5Mb
  sub-directories of 1Mb or more:
    data  92.4Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
gtpath: no visible global function definition for ‘is’
Undefined global functions or variables:
  is
Consider adding
  importFrom("methods", "is")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Data with usage in documentation object 'gsvs' but not in code:
  gsvs

* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
         user system elapsed
geuFPKM 8.168  0.372   8.561
gsvs    7.916  0.312   8.229
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.4-data-experiment/meat/geuvPack.Rcheck/00check.log’
for details.

* installing *source* package ‘geuvPack’ ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (geuvPack)

name	user	system	elapsed
geuFPKM	8.168	0.372	8.561
gsvs	7.916	0.312	8.229
gtpath	0.004	0.000	0.001