curatedMetagenomicData 1.2.1
Lucas Schiffer
| Snapshot Date: 2017-08-15 09:00:06 -0400 (Tue, 15 Aug 2017) | | URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_5/experiment/pkgs/curatedMetagenomicData | | Last Changed Rev: 4227 / Revision: 4227 | | Last Changed Date: 2017-08-14 12:27:42 -0400 (Mon, 14 Aug 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | [ ERROR ] | skipped | | |
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### Running command:
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### /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data curatedMetagenomicData
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* checking for file ‘curatedMetagenomicData/DESCRIPTION’ ... OK
* preparing ‘curatedMetagenomicData’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: dplyr
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: phyloseq
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:dplyr':
combine, intersect, setdiff, union
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, cbind, colMeans, colSums, colnames, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect,
is.unsorted, lapply, lengths, mapply, match, mget, order,
paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans,
rowSums, rownames, sapply, setdiff, sort, table, tapply,
union, unique, unsplit, which, which.max, which.min
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Attaching package: 'Biobase'
The following object is masked from 'package:phyloseq':
sampleNames
Loading required package: ExperimentHub
Loading required package: AnnotationHub
Attaching package: 'AnnotationHub'
The following object is masked from 'package:Biobase':
cache
Loading required package: magrittr
Quitting from lines 69-72 (curatedMetagenomicData.Rmd)
Error: processing vignette 'curatedMetagenomicData.Rmd' failed with diagnostics:
package or namespace load failed for 'curatedMetagenomicData':
.onLoad failed in loadNamespace() for 'curatedMetagenomicData', details:
call: file(con, "r")
error: cannot open the connection
Execution halted