HiCDataHumanIMR90 0.114.0
Nicolas Servant
| Snapshot Date: 2018-10-16 07:35:22 -0400 (Tue, 16 Oct 2018) |
| URL: https://git.bioconductor.org/packages/HiCDataHumanIMR90 |
| Branch: RELEASE_3_7 |
| Last Commit: d3b0f7e |
| Last Changed Date: 2018-04-30 10:31:28 -0400 (Mon, 30 Apr 2018) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | [ ERROR ] | | |
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### Running command:
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### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:HiCDataHumanIMR90.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings HiCDataHumanIMR90_0.114.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.7-data-experiment/meat/HiCDataHumanIMR90.Rcheck’
* using R version 3.5.1 Patched (2018-07-12 r74967)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HiCDataHumanIMR90/DESCRIPTION’ ... OK
* this is package ‘HiCDataHumanIMR90’ version ‘0.114.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HiCDataHumanIMR90’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 71.0Mb
sub-directories of 1Mb or more:
data 70.9Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘HiCDataHumanIMR90-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Dixon2012_IMR90
> ### Title: HiC data Human IMR90
> ### Aliases: Dixon2012_IMR90 hic_imr90_40 tads_imr90
> ### Keywords: datasets
>
> ### ** Examples
>
> data(Dixon2012_IMR90)
> show(hic_imr90_40)
Loading required package: HiTC
Loading required package: IRanges
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colMeans, colSums, colnames,
dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
intersect, is.unsorted, lapply, lengths, mapply, match, mget,
order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
union, unique, unsplit, which, which.max, which.min
Loading required package: S4Vectors
Loading required package: stats4
Attaching package: ‘S4Vectors’
The following object is masked from ‘package:base’:
expand.grid
Loading required package: GenomicRanges
Loading required package: GenomeInfoDb
Error: package or namespace load failed for ‘HiTC’:
.onLoad failed in loadNamespace() for 'DelayedArray', details:
call: initialize(value, ...)
error: attempt to apply non-function
Error in .requirePackage(package) :
unable to find required package ‘HiTC’
Calls: show ... getClass -> getClassDef -> .classEnv -> .requirePackage
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 ERROR, 1 NOTE
See
‘/home/biocbuild/bbs-3.7-data-experiment/meat/HiCDataHumanIMR90.Rcheck/00check.log’
for details.