Mike Smith
| Snapshot Date: 2018-05-18 07:35:08 -0400 (Fri, 18 May 2018) |
| URL: https://git.bioconductor.org/packages/BiocMetaWorkflow |
| Branch: RELEASE_3_7 |
| Last Commit: a2556bc |
| Last Changed Date: 2018-04-30 10:07:09 -0400 (Mon, 30 Apr 2018) |
| Back to Workflows build report for BioC 3.7 |
This page was generated on 2018-05-18 12:48:10 -0400 (Fri, 18 May 2018).
| Package 3/21 | Hostname | OS / Arch | INSTALL | BUILD | BUILD WEB VIG | ||||||
| BiocMetaWorkflow 1.0.0 Mike Smith
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | [ OK ] | |
| Package: BiocMetaWorkflow |
| Version: 1.0.0 |
| Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'rmarkdown::render(".buildwebvig/BiocMetaWorkflow/Authoring_BioC_Workflows.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'knitr::purl(".buildwebvig/BiocMetaWorkflow/Authoring_BioC_Workflows.Rmd", ".buildwebvig/BiocMetaWorkflow/Authoring_BioC_Workflows.R")' |
| StartedAt: 2018-05-18 08:54:56 -0400 (Fri, 18 May 2018) |
| EndedAt: 2018-05-18 08:55:04 -0400 (Fri, 18 May 2018) |
| EllapsedTime: 8.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'rmarkdown::render(".buildwebvig/BiocMetaWorkflow/Authoring_BioC_Workflows.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'knitr::purl(".buildwebvig/BiocMetaWorkflow/Authoring_BioC_Workflows.Rmd", ".buildwebvig/BiocMetaWorkflow/Authoring_BioC_Workflows.R")'
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> rmarkdown::render(".buildwebvig/BiocMetaWorkflow/Authoring_BioC_Workflows.Rmd", output_format="BiocStyle:::html_fragment")
processing file: Authoring_BioC_Workflows.Rmd
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label: createBiocWorkflow (with options)
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$ message: logi FALSE
* Creating `MyWorkflow.Rproj` from template.
* Adding `.Rproj.user`, `.Rhistory`, `.RData` to ./.gitignore
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output file: Authoring_BioC_Workflows.knit.md
/usr/bin/pandoc +RTS -K512m -RTS Authoring_BioC_Workflows.utf8.md --to html4 --from markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash+smart --output Authoring_BioC_Workflows.html --email-obfuscation none --self-contained --wrap preserve --standalone --section-divs --table-of-contents --toc-depth 3 --template /home/biocbuild/bbs-3.7-bioc/R/library/BiocStyle/resources/fragment.html --no-highlight --number-sections --mathjax --variable 'mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' --filter /usr/bin/pandoc-citeproc
Output created: Authoring_BioC_Workflows.html
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> knitr::purl(".buildwebvig/BiocMetaWorkflow/Authoring_BioC_Workflows.Rmd", ".buildwebvig/BiocMetaWorkflow/Authoring_BioC_Workflows.R")
processing file: .buildwebvig/BiocMetaWorkflow/Authoring_BioC_Workflows.Rmd
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output file: .buildwebvig/BiocMetaWorkflow/Authoring_BioC_Workflows.R
[1] ".buildwebvig/BiocMetaWorkflow/Authoring_BioC_Workflows.R"
Warning message:
In res[i] <- withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), :
number of items to replace is not a multiple of replacement length
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