Sean Davis
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/ACME |
| Branch: RELEASE_3_8 |
| Last Commit: cd03196 |
| Last Changed Date: 2018-10-30 11:41:43 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:20:11 -0400 (Sat, 13 Apr 2019).
| Package 14/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ACME 2.38.0 Sean Davis
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: ACME |
| Version: 2.38.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/ACME_2.38.0.tar.gz && rm -rf ACME.buildbin-libdir && mkdir ACME.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ACME.buildbin-libdir ACME_2.38.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL ACME_2.38.0.zip && rm ACME_2.38.0.tar.gz ACME_2.38.0.zip |
| StartedAt: 2019-04-12 19:26:26 -0400 (Fri, 12 Apr 2019) |
| EndedAt: 2019-04-12 19:27:31 -0400 (Fri, 12 Apr 2019) |
| EllapsedTime: 64.6 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/ACME_2.38.0.tar.gz && rm -rf ACME.buildbin-libdir && mkdir ACME.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ACME.buildbin-libdir ACME_2.38.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL ACME_2.38.0.zip && rm ACME_2.38.0.tar.gz ACME_2.38.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 9441k 100 9441k 0 0 43.5M 0 --:--:-- --:--:-- --:--:-- 44.3M
install for i386
* installing *source* package 'ACME' ...
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c windowChisq.c -o windowChisq.o
windowChisq.c: In function 'windowChisq':
windowChisq.c:58:14: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
firstprobe>0) {
^
windowChisq.c:63:13: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
lastprobe<(na-1)) {
^
windowChisq.c:21:11: warning: unused variable 'xa' [-Wunused-variable]
double *xa,*xlocations,*xchivals;
^
windowChisq.c: At top level:
windowChisq.c:86:5: warning: initialization from incompatible pointer type
{"windowChisq",&windowChisq,5},
^
windowChisq.c:86:5: warning: (near initialization for 'callMethods[0].fun')
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o ACME.dll tmp.def windowChisq.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/ACME.buildbin-libdir/ACME/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'ACME'
finding HTML links ... done
ACMECalcSet-class html
finding level-2 HTML links ... done
ACMESet-class html
aGFF-class html
aGFFCalc-class html
do.aGFF.calc html
example.agff html
findClosestGene html
findRegions html
generics html
getRefflat html
read.resultsGFF html
write.bedGraph html
write.sgr html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'ACME' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c windowChisq.c -o windowChisq.o
windowChisq.c: In function 'windowChisq':
windowChisq.c:58:14: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
firstprobe>0) {
^
windowChisq.c:63:13: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
lastprobe<(na-1)) {
^
windowChisq.c:21:11: warning: unused variable 'xa' [-Wunused-variable]
double *xa,*xlocations,*xchivals;
^
windowChisq.c: At top level:
windowChisq.c:86:5: warning: initialization from incompatible pointer type
{"windowChisq",&windowChisq,5},
^
windowChisq.c:86:5: warning: (near initialization for 'callMethods[0].fun')
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o ACME.dll tmp.def windowChisq.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/ACME.buildbin-libdir/ACME/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ACME' as ACME_2.38.0.zip
* DONE (ACME)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'ACME' successfully unpacked and MD5 sums checked
In R CMD INSTALL