Taosheng Xu
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/CancerSubtypes |
| Branch: RELEASE_3_8 |
| Last Commit: d37e05a |
| Last Changed Date: 2018-10-30 11:42:02 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:26:59 -0400 (Sat, 13 Apr 2019).
| Package 199/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| CancerSubtypes 1.8.0 Taosheng Xu
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: CancerSubtypes |
| Version: 1.8.0 |
| Command: C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:CancerSubtypes.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings CancerSubtypes_1.8.0.tar.gz |
| StartedAt: 2019-04-13 00:57:42 -0400 (Sat, 13 Apr 2019) |
| EndedAt: 2019-04-13 01:04:22 -0400 (Sat, 13 Apr 2019) |
| EllapsedTime: 400.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: CancerSubtypes.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:CancerSubtypes.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings CancerSubtypes_1.8.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.8-bioc/meat/CancerSubtypes.Rcheck'
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'CancerSubtypes/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'CancerSubtypes' version '1.8.0'
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'CancerSubtypes' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
sigclustTest 35.20 0.07 35.28
ExecuteSNF.CC 14.25 0.14 14.40
survAnalysis 10.57 0.08 10.66
FSbyCox 6.67 0.00 6.67
drawHeatmap 6.53 0.14 6.67
ExecuteCC 5.79 0.34 6.14
ExecuteCNMF 1.72 0.41 22.85
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
sigclustTest 34.56 0.16 34.81
ExecuteSNF.CC 18.24 0.22 18.53
survAnalysis 15.41 0.03 15.43
ExecuteCC 8.42 0.28 8.95
FSbyCox 7.83 0.00 7.82
drawHeatmap 6.33 0.11 6.44
ExecuteCNMF 2.33 0.42 23.50
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'runTests.R'
OK
** running tests for arch 'x64' ...
Running 'runTests.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
CancerSubtypes.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/CancerSubtypes_1.8.0.tar.gz && rm -rf CancerSubtypes.buildbin-libdir && mkdir CancerSubtypes.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CancerSubtypes.buildbin-libdir CancerSubtypes_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL CancerSubtypes_1.8.0.zip && rm CancerSubtypes_1.8.0.tar.gz CancerSubtypes_1.8.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 1878k 100 1878k 0 0 27.8M 0 --:--:-- --:--:-- --:--:-- 29.5M
install for i386
* installing *source* package 'CancerSubtypes' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'CancerSubtypes'
finding HTML links ... done
DiffExp.limma html
ExecuteCC html
ExecuteCNMF html
finding level-2 HTML links ... done
ExecuteSNF.CC html
ExecuteSNF html
ExecuteWSNF html
ExecuteiCluster html
FSbyCox html
FSbyMAD html
FSbyPCA html
FSbyVar html
GeneExp html
Ranking html
data.checkDistribution html
data.imputation html
data.normalization html
drawHeatmap html
miRNAExp html
saveFigure html
sigclustTest html
silhouette_SimilarityMatrix html
spectralAlg html
status html
survAnalysis html
time html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'CancerSubtypes' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CancerSubtypes' as CancerSubtypes_1.8.0.zip
* DONE (CancerSubtypes)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'CancerSubtypes' successfully unpacked and MD5 sums checked
In R CMD INSTALL
|
CancerSubtypes.Rcheck/tests_i386/runTests.Rout
R version 3.5.3 (2019-03-11) -- "Great Truth"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("CancerSubtypes")
Attaching package: 'pkgmaker'
The following object is masked from 'package:base':
isFALSE
NMF - BioConductor layer [OK] | Shared memory capabilities [NO: windows] | Cores 19/20
RUNIT TEST PROTOCOL -- Sat Apr 13 01:04:13 2019
***********************************************
Number of test functions: 1
Number of errors: 0
Number of failures: 0
1 Test Suite :
CancerSubtypes RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
3.15 0.23 3.37
|
CancerSubtypes.Rcheck/tests_x64/runTests.Rout
R version 3.5.3 (2019-03-11) -- "Great Truth"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("CancerSubtypes")
Attaching package: 'pkgmaker'
The following object is masked from 'package:base':
isFALSE
NMF - BioConductor layer [OK] | Shared memory capabilities [NO: windows] | Cores 19/20
RUNIT TEST PROTOCOL -- Sat Apr 13 01:04:17 2019
***********************************************
Number of test functions: 1
Number of errors: 0
Number of failures: 0
1 Test Suite :
CancerSubtypes RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
3.07 0.18 3.25
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CancerSubtypes.Rcheck/examples_i386/CancerSubtypes-Ex.timings
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CancerSubtypes.Rcheck/examples_x64/CancerSubtypes-Ex.timings
|