Multiple platform build/check report for BioC 3.8 - CHECK report for CoCiteStats on tokay1

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### Running command:
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###   C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:CoCiteStats.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings CoCiteStats_1.54.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.8-bioc/meat/CoCiteStats.Rcheck'
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'CoCiteStats/DESCRIPTION' ... OK
* this is package 'CoCiteStats' version '1.54.0'
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
 OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'CoCiteStats' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'org.Hs.eg.db'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
gene.geneslist.sig: no visible global function definition for 'Lkeys'
gene.geneslist.sig: no visible binding for global variable
  'org.Hs.egPMID'
paperLen: no visible global function definition for 'toTable'
paperLen: no visible binding for global variable 'org.Hs.egPMID'
paperLen: no visible global function definition for 'nhit'
paperLen: no visible global function definition for 'revmap'
Undefined global functions or variables:
  Lkeys nhit org.Hs.egPMID revmap toTable
* checking Rd files ... NOTE
prepare_Rd: gene.geneslist.statistic.Rd:19-21: Dropping empty section \details
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                          user system elapsed
actorAdjTable            21.53   6.18   28.61
gene.geneslist.sig       19.06   0.28   19.34
gene.gene.statistic      15.58   0.24   15.81
gene.geneslist.statistic 12.63   0.05   12.68
twowayTable              11.73   0.08   11.81
paperLen                 11.46   0.03   11.50
twTStats                 10.74   0.01   10.75
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                          user system elapsed
gene.geneslist.sig       19.75   0.12   19.89
actorAdjTable            15.26   3.87   19.14
twTStats                 15.55   0.03   15.57
twowayTable              13.73   0.01   13.75
paperLen                 13.69   0.00   13.71
gene.gene.statistic      13.43   0.13   13.55
gene.geneslist.statistic 13.36   0.02   13.37
* checking PDF version of manual ... OK
* DONE

Status: 4 NOTEs
See
  'C:/Users/biocbuild/bbs-3.8-bioc/meat/CoCiteStats.Rcheck/00check.log'
for details.

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###
### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/CoCiteStats_1.54.0.tar.gz && rm -rf CoCiteStats.buildbin-libdir && mkdir CoCiteStats.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CoCiteStats.buildbin-libdir CoCiteStats_1.54.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL CoCiteStats_1.54.0.zip && rm CoCiteStats_1.54.0.tar.gz CoCiteStats_1.54.0.zip
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

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100  5363  100  5363    0     0   131k      0 --:--:-- --:--:-- --:--:--  145k

install for i386

* installing *source* package 'CoCiteStats' ...
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CoCiteStats'
    finding HTML links ... done
    actorAdjTable                           html  
    gene.gene.statistic                     html  
    gene.geneslist.sig                      html  
    gene.geneslist.statistic                html  
    paperLen                                html  
    twTStats                                html  
    twowayTable                             html  
** building package indices
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'CoCiteStats' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CoCiteStats' as CoCiteStats_1.54.0.zip
* DONE (CoCiteStats)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'CoCiteStats' successfully unpacked and MD5 sums checked
In R CMD INSTALL

CHECK report for CoCiteStats on tokay1

Summary

Command output

Installation output

Tests output

Example timings