Zuguang Gu
| Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019) |
| URL: https://git.bioconductor.org/packages/ComplexHeatmap |
| Branch: RELEASE_3_8 |
| Last Commit: 1501ecc |
| Last Changed Date: 2018-10-30 11:41:57 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-16 11:51:12 -0400 (Tue, 16 Apr 2019).
| Package 314/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ComplexHeatmap 1.20.0 Zuguang Gu
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | [ OK ] | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: ComplexHeatmap |
| Version: 1.20.0 |
| Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:ComplexHeatmap.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings ComplexHeatmap_1.20.0.tar.gz |
| StartedAt: 2019-04-15 23:07:49 -0400 (Mon, 15 Apr 2019) |
| EndedAt: 2019-04-15 23:09:38 -0400 (Mon, 15 Apr 2019) |
| EllapsedTime: 108.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ComplexHeatmap.Rcheck |
| Warnings: 0 |
##############################################################################
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### Running command:
###
### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:ComplexHeatmap.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings ComplexHeatmap_1.20.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.8-bioc/meat/ComplexHeatmap.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ComplexHeatmap/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ComplexHeatmap’ version ‘1.20.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ComplexHeatmap’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
Heatmap 20.536 0.036 20.733
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘test-all.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
ComplexHeatmap.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL ComplexHeatmap ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’ * installing *source* package ‘ComplexHeatmap’ ... ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (ComplexHeatmap)
ComplexHeatmap.Rcheck/tests/test-all.Rout
R version 3.5.3 (2019-03-11) -- "Great Truth"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> suppressWarnings(suppressPackageStartupMessages(library(ComplexHeatmap)))
>
> test_check("ComplexHeatmap")
══ testthat results ═══════════════════════════════════════════════════════════
OK: 17 SKIPPED: 0 FAILED: 0
>
> proc.time()
user system elapsed
1.044 0.052 1.095
ComplexHeatmap.Rcheck/ComplexHeatmap-Ex.timings
| name | user | system | elapsed | |
| AdditiveUnit-class | 0 | 0 | 0 | |
| AdditiveUnit | 0 | 0 | 0 | |
| ColorMapping-class | 0 | 0 | 0 | |
| ColorMapping | 0.076 | 0.000 | 0.077 | |
| ComplexHeatmap-package | 0 | 0 | 0 | |
| Heatmap-class | 0 | 0 | 0 | |
| Heatmap | 20.536 | 0.036 | 20.733 | |
| HeatmapAnnotation-class | 0 | 0 | 0 | |
| HeatmapAnnotation | 0.048 | 0.000 | 0.049 | |
| HeatmapList-class | 3.884 | 0.012 | 3.906 | |
| HeatmapList | 0 | 0 | 0 | |
| Legend | 0.404 | 0.000 | 0.407 | |
| SingleAnnotation-class | 0 | 0 | 0 | |
| SingleAnnotation | 0.036 | 0.000 | 0.040 | |
| add.AdditiveUnit | 4.304 | 0.004 | 4.315 | |
| add_heatmap-Heatmap-method | 1.324 | 0.000 | 1.325 | |
| add_heatmap-HeatmapAnnotation-method | 0.636 | 0.000 | 0.636 | |
| add_heatmap-HeatmapList-method | 1.668 | 0.000 | 1.673 | |
| add_heatmap-dispatch | 0 | 0 | 0 | |
| adjust_dend_by_leaf_width | 1.548 | 0.016 | 1.563 | |
| anno_barplot | 0.016 | 0.000 | 0.015 | |
| anno_boxplot | 0.040 | 0.000 | 0.041 | |
| anno_density | 0.420 | 0.004 | 0.423 | |
| anno_histogram | 0.056 | 0.004 | 0.060 | |
| anno_link | 2.240 | 0.012 | 2.252 | |
| anno_oncoprint_barplot | 0 | 0 | 0 | |
| anno_points | 0.032 | 0.000 | 0.032 | |
| anno_text | 0.456 | 0.000 | 0.455 | |
| annotation_legend_size-HeatmapList-method | 0 | 0 | 0 | |
| color_mapping_legend-ColorMapping-method | 0.296 | 0.004 | 0.300 | |
| columnAnnotation | 0.008 | 0.000 | 0.011 | |
| column_anno_barplot | 0.000 | 0.000 | 0.001 | |
| column_anno_boxplot | 0 | 0 | 0 | |
| column_anno_density | 0 | 0 | 0 | |
| column_anno_histogram | 0 | 0 | 0 | |
| column_anno_link | 0 | 0 | 0 | |
| column_anno_points | 0 | 0 | 0 | |
| column_anno_text | 0.000 | 0.000 | 0.001 | |
| column_dend-Heatmap-method | 0.044 | 0.000 | 0.046 | |
| column_dend-HeatmapList-method | 0.232 | 0.000 | 0.232 | |
| column_dend-dispatch | 0.000 | 0.000 | 0.001 | |
| column_order-Heatmap-method | 0.056 | 0.000 | 0.059 | |
| column_order-HeatmapList-method | 0.224 | 0.000 | 0.223 | |
| column_order-dispatch | 0 | 0 | 0 | |
| component_height-Heatmap-method | 0 | 0 | 0 | |
| component_height-HeatmapList-method | 0 | 0 | 0 | |
| component_height-dispatch | 0 | 0 | 0 | |
| component_width-Heatmap-method | 0.000 | 0.000 | 0.001 | |
| component_width-HeatmapList-method | 0.004 | 0.000 | 0.000 | |
| component_width-dispatch | 0 | 0 | 0 | |
| decorate_annotation | 0.628 | 0.000 | 0.627 | |
| decorate_column_dend | 0 | 0 | 0 | |
| decorate_column_names | 0 | 0 | 0 | |
| decorate_column_title | 0 | 0 | 0 | |
| decorate_dend | 0.264 | 0.004 | 0.265 | |
| decorate_dimnames | 0.448 | 0.004 | 0.453 | |
| decorate_heatmap_body | 0.372 | 0.000 | 0.375 | |
| decorate_row_dend | 0 | 0 | 0 | |
| decorate_row_names | 0 | 0 | 0 | |
| decorate_row_title | 0.000 | 0.000 | 0.001 | |
| decorate_title | 0.436 | 0.000 | 0.437 | |
| densityHeatmap | 4.160 | 0.016 | 4.187 | |
| dist2 | 0.024 | 0.000 | 0.026 | |
| draw-Heatmap-method | 0.604 | 0.000 | 0.603 | |
| draw-HeatmapAnnotation-method | 0.128 | 0.004 | 0.130 | |
| draw-HeatmapList-method | 1.496 | 0.004 | 1.501 | |
| draw-SingleAnnotation-method | 0.096 | 0.000 | 0.097 | |
| draw-dispatch | 0 | 0 | 0 | |
| draw_annotation-Heatmap-method | 0.000 | 0.000 | 0.001 | |
| draw_annotation_legend-HeatmapList-method | 0 | 0 | 0 | |
| draw_dend-Heatmap-method | 0 | 0 | 0 | |
| draw_dimnames-Heatmap-method | 0 | 0 | 0 | |
| draw_heatmap_body-Heatmap-method | 0 | 0 | 0 | |
| draw_heatmap_legend-HeatmapList-method | 0 | 0 | 0 | |
| draw_heatmap_list-HeatmapList-method | 0.000 | 0.000 | 0.001 | |
| draw_title-Heatmap-method | 0 | 0 | 0 | |
| draw_title-HeatmapList-method | 0 | 0 | 0 | |
| draw_title-dispatch | 0 | 0 | 0 | |
| enhanced_basicplot | 1.196 | 0.000 | 1.198 | |
| get_color_mapping_list-HeatmapAnnotation-method | 0 | 0 | 0 | |
| get_color_mapping_param_list-HeatmapAnnotation-method | 0 | 0 | 0 | |
| grid.dendrogram | 0.016 | 0.000 | 0.015 | |
| grid.dendrogram2 | 0.016 | 0.000 | 0.016 | |
| heatmap_legend_size-HeatmapList-method | 0 | 0 | 0 | |
| ht_global_opt | 0 | 0 | 0 | |
| is_abs_unit | 0.000 | 0.000 | 0.001 | |
| make_column_cluster-Heatmap-method | 0 | 0 | 0 | |
| make_layout-Heatmap-method | 0 | 0 | 0 | |
| make_layout-HeatmapList-method | 0 | 0 | 0 | |
| make_layout-dispatch | 0.000 | 0.000 | 0.001 | |
| make_row_cluster-Heatmap-method | 0 | 0 | 0 | |
| map_to_colors-ColorMapping-method | 0.016 | 0.000 | 0.016 | |
| max_text_height | 0.000 | 0.000 | 0.002 | |
| max_text_width | 0.004 | 0.000 | 0.002 | |
| oncoPrint | 0 | 0 | 0 | |
| packLegend | 1.492 | 0.000 | 1.495 | |
| plotDataFrame | 3.844 | 0.012 | 3.861 | |
| prepare-Heatmap-method | 0 | 0 | 0 | |
| rowAnnotation | 0.012 | 0.000 | 0.010 | |
| row_anno_barplot | 0 | 0 | 0 | |
| row_anno_boxplot | 0 | 0 | 0 | |
| row_anno_density | 0 | 0 | 0 | |
| row_anno_histogram | 0.004 | 0.000 | 0.001 | |
| row_anno_link | 0.000 | 0.000 | 0.001 | |
| row_anno_points | 0 | 0 | 0 | |
| row_anno_text | 0 | 0 | 0 | |
| row_dend-Heatmap-method | 0.076 | 0.004 | 0.079 | |
| row_dend-HeatmapList-method | 0.252 | 0.000 | 0.253 | |
| row_dend-dispatch | 0 | 0 | 0 | |
| row_order-Heatmap-method | 0.068 | 0.000 | 0.066 | |
| row_order-HeatmapList-method | 0.228 | 0.000 | 0.228 | |
| row_order-dispatch | 0 | 0 | 0 | |
| selectArea | 0 | 0 | 0 | |
| set_component_height-Heatmap-method | 0 | 0 | 0 | |
| show-ColorMapping-method | 0 | 0 | 0 | |
| show-Heatmap-method | 0.808 | 0.004 | 0.812 | |
| show-HeatmapAnnotation-method | 0.000 | 0.000 | 0.001 | |
| show-HeatmapList-method | 0 | 0 | 0 | |
| show-SingleAnnotation-method | 0.000 | 0.000 | 0.001 | |
| show-dispatch | 0 | 0 | 0 | |
| unify_mat_list | 0 | 0 | 0 | |