Van Anh Huynh-Thu
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/GENIE3 |
| Branch: RELEASE_3_8 |
| Last Commit: ae719c7 |
| Last Changed Date: 2019-01-31 18:54:03 -0400 (Thu, 31 Jan 2019) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:28:06 -0400 (Sat, 13 Apr 2019).
| Package 615/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| GENIE3 1.4.3 Van Anh Huynh-Thu
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: GENIE3 |
| Version: 1.4.3 |
| Command: rm -rf GENIE3.buildbin-libdir && mkdir GENIE3.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GENIE3.buildbin-libdir GENIE3_1.4.3.tar.gz |
| StartedAt: 2019-04-13 07:18:30 -0400 (Sat, 13 Apr 2019) |
| EndedAt: 2019-04-13 07:18:42 -0400 (Sat, 13 Apr 2019) |
| EllapsedTime: 12.0 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: GENIE3_1.4.3.zip |
| PackageFileSize: 285.5 KiB |
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### Running command:
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### rm -rf GENIE3.buildbin-libdir && mkdir GENIE3.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GENIE3.buildbin-libdir GENIE3_1.4.3.tar.gz
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install for i386
* installing *source* package 'GENIE3' ...
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c GENIE3.c -o GENIE3.o
GENIE3.c: In function 'find_the_best_threshold_multiregr':
GENIE3.c:1368:24: warning: 'best_threshold' may be used uninitialized in this function [-Wmaybe-uninitialized]
current_threshold.f=best_threshold;
^
GENIE3.c:1370:27: warning: 'best_info' may be used uninitialized in this function [-Wmaybe-uninitialized]
current_threshold_info=best_info;
^
GENIE3.c: In function 'build_one_tree_ensemble':
GENIE3.c:1052:7: warning: 'fp' may be used uninitialized in this function [-Wmaybe-uninitialized]
write_one_tree(current_tree, fp);
^
GENIE3.c: In function 'find_the_best_threshold_symb_multiregr':
GENIE3.c:1466:27: warning: 'best_info' may be used uninitialized in this function [-Wmaybe-uninitialized]
current_threshold_info=best_info;
^
GENIE3.c: In function 'BuildTreeEns':
GENIE3.c:1753:6: warning: 'flag_continue' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (flag_continue == 1) {
^
GENIE3.c:1725:7: note: 'flag_continue' was declared here
int flag_continue;
^
GENIE3.c: In function 'compute_ltrees_variable_importance_multiregr_separate':
GENIE3.c:1762:3: warning: 'flag_continue' may be used uninitialized in this function [-Wmaybe-uninitialized]
return flag_continue;
^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o GENIE3.dll tmp.def GENIE3.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/GENIE3.buildbin-libdir/GENIE3/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
in method for 'GENIE3' with signature '"SummarizedExperiment"': no definition for class "SummarizedExperiment"
in method for 'GENIE3' with signature '"ExpressionSet"': no definition for class "ExpressionSet"
** help
*** installing help indices
converting help for package 'GENIE3'
finding HTML links ... done
GENIE3 html
getLinkList html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'GENIE3' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c GENIE3.c -o GENIE3.o
GENIE3.c: In function 'find_the_best_threshold_multiregr':
GENIE3.c:1368:24: warning: 'best_threshold' may be used uninitialized in this function [-Wmaybe-uninitialized]
current_threshold.f=best_threshold;
^
GENIE3.c:1370:27: warning: 'best_info' may be used uninitialized in this function [-Wmaybe-uninitialized]
current_threshold_info=best_info;
^
GENIE3.c: In function 'build_one_tree_ensemble':
GENIE3.c:1052:7: warning: 'fp' may be used uninitialized in this function [-Wmaybe-uninitialized]
write_one_tree(current_tree, fp);
^
GENIE3.c: In function 'find_the_best_threshold_symb_multiregr':
GENIE3.c:1466:27: warning: 'best_info' may be used uninitialized in this function [-Wmaybe-uninitialized]
current_threshold_info=best_info;
^
GENIE3.c: In function 'compute_ltrees_variable_importance_multiregr_separate':
GENIE3.c:1762:3: warning: 'flag_continue' may be used uninitialized in this function [-Wmaybe-uninitialized]
return flag_continue;
^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o GENIE3.dll tmp.def GENIE3.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/GENIE3.buildbin-libdir/GENIE3/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GENIE3' as GENIE3_1.4.3.zip
* DONE (GENIE3)
In R CMD INSTALL
In R CMD INSTALL