Package: GenoGAM

Version: 2.0.3

Command: rm -rf GenoGAM.buildbin-libdir && mkdir GenoGAM.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GenoGAM_2.0.3.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GenoGAM.buildbin-libdir

StartedAt: 2019-04-16 04:07:23 -0400 (Tue, 16 Apr 2019)

EndedAt: 2019-04-16 04:08:50 -0400 (Tue, 16 Apr 2019)

EllapsedTime: 86.2 seconds

RetCode: 0

Status:  OK

PackageFile: GenoGAM_2.0.3.tgz

PackageFileSize: 4.883 MiB

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### Running command:
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###   rm -rf GenoGAM.buildbin-libdir && mkdir GenoGAM.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GenoGAM_2.0.3.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GenoGAM.buildbin-libdir
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GenoGAM.buildbin-libdir GenoGAM_2.0.3.tar.gz'
>>>>>>> 

* installing *source* package ‘GenoGAM’ ...
** libs
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -DARMA_64BIT_WORD=1 -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include   -fPIC  -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -DARMA_64BIT_WORD=1 -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include   -fPIC  -Wall -g -O2 -c matrixMult.cpp -o matrixMult.o
clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o GenoGAM.so RcppExports.o matrixMult.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.8-bioc/meat/GenoGAM.buildbin-libdir/GenoGAM/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (GenoGAM)


>>>>>>> 
>>>>>>> FIXING LINKS FOR GenoGAM.buildbin-libdir/GenoGAM/libs//GenoGAM.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "GenoGAM.buildbin-libdir/GenoGAM/libs//GenoGAM.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "GenoGAM.buildbin-libdir/GenoGAM/libs//GenoGAM.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "GenoGAM.buildbin-libdir/GenoGAM/libs//GenoGAM.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "GenoGAM.buildbin-libdir/GenoGAM/libs//GenoGAM.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "GenoGAM.buildbin-libdir/GenoGAM/libs//GenoGAM.so"
install_name_tool -change "/usr/local/gfortran/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "GenoGAM.buildbin-libdir/GenoGAM/libs//GenoGAM.so"
install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "GenoGAM.buildbin-libdir/GenoGAM/libs//GenoGAM.so"