Xin Wang
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/HTSanalyzeR |
| Branch: RELEASE_3_8 |
| Last Commit: 2e64a32 |
| Last Changed Date: 2019-01-04 13:35:36 -0400 (Fri, 04 Jan 2019) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:21:20 -0400 (Sat, 13 Apr 2019).
| Package 736/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| HTSanalyzeR 2.34.1 Xin Wang
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: HTSanalyzeR |
| Version: 2.34.1 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/HTSanalyzeR_2.34.1.tar.gz && rm -rf HTSanalyzeR.buildbin-libdir && mkdir HTSanalyzeR.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HTSanalyzeR.buildbin-libdir HTSanalyzeR_2.34.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL HTSanalyzeR_2.34.1.zip && rm HTSanalyzeR_2.34.1.tar.gz HTSanalyzeR_2.34.1.zip |
| StartedAt: 2019-04-12 20:34:22 -0400 (Fri, 12 Apr 2019) |
| EndedAt: 2019-04-12 20:35:48 -0400 (Fri, 12 Apr 2019) |
| EllapsedTime: 86.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/HTSanalyzeR_2.34.1.tar.gz && rm -rf HTSanalyzeR.buildbin-libdir && mkdir HTSanalyzeR.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HTSanalyzeR.buildbin-libdir HTSanalyzeR_2.34.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL HTSanalyzeR_2.34.1.zip && rm HTSanalyzeR_2.34.1.tar.gz HTSanalyzeR_2.34.1.zip
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install for i386
* installing *source* package 'HTSanalyzeR' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'igraph::union' by 'GSEABase::union' when loading 'HTSanalyzeR'
** help
*** installing help indices
converting help for package 'HTSanalyzeR'
finding HTML links ... done
FDRcollectionGsea html
GOGeneSets html
GSCA-class html
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GenHTSAHtmlRowUnit html
HTSanalyzeR html
HTSanalyzeR4cellHTS2 html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpiSxY7M/R.INSTALL24ac4f53714/HTSanalyzeR/man/HTSanalyzeR4cellHTS2.Rd:8: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpiSxY7M/R.INSTALL24ac4f53714/HTSanalyzeR/man/HTSanalyzeR4cellHTS2.Rd:9: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
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KeggGeneSets html
NWA-class html
aggregatePvals html
analyze html
analyzeGeneSetCollections html
annotationConvertor html
appendGSTerms html
biogridDataDownload html
celAnnotationConvertor html
cellHTS2OutputStatTests html
changes html
collectionGsea html
data-KcViab html
drosoAnnotationConvertor html
duplicateRemover html
getTopGeneSets html
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gseaPlots html
gseaScores html
htmlAttrVectorPaste html
hyperGeoTest html
interactome html
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makeGSEAplots html
makeOverlapTable html
mammalAnnotationConvertor html
multiHyperGeoTest html
networkAnalysis html
networkPlot html
pairwiseGsea html
pairwiseGseaPlot html
pairwisePhenoMannWhit html
paraCheck html
permutationPvalueCollectionGsea html
plotEnrichMap html
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plotGSEA html
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Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpiSxY7M/R.INSTALL24ac4f53714/HTSanalyzeR/man/plotGSEA.Rd:25: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
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plotSubNet html
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preprocess html
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Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpiSxY7M/R.INSTALL24ac4f53714/HTSanalyzeR/man/preprocess.Rd:35: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
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report html
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reportAll html
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summarize html
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viewEnrichMap html
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Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpiSxY7M/R.INSTALL24ac4f53714/HTSanalyzeR/man/viewEnrichMap.Rd:24: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpiSxY7M/R.INSTALL24ac4f53714/HTSanalyzeR/man/viewEnrichMap.Rd:25: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpiSxY7M/R.INSTALL24ac4f53714/HTSanalyzeR/man/viewEnrichMap.Rd:29: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
viewGSEA html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpiSxY7M/R.INSTALL24ac4f53714/HTSanalyzeR/man/viewGSEA.Rd:10: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpiSxY7M/R.INSTALL24ac4f53714/HTSanalyzeR/man/viewGSEA.Rd:14: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpiSxY7M/R.INSTALL24ac4f53714/HTSanalyzeR/man/viewGSEA.Rd:24: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpiSxY7M/R.INSTALL24ac4f53714/HTSanalyzeR/man/viewGSEA.Rd:27: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
viewSubNet html
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writeHTSAHtmlHead html
writeHTSAHtmlSummary html
writeHTSAHtmlTab html
writeHTSAHtmlTable html
writeHTSAHtmlTail html
writeReportHTSA html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpiSxY7M/R.INSTALL24ac4f53714/HTSanalyzeR/man/writeReportHTSA.Rd:8: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpiSxY7M/R.INSTALL24ac4f53714/HTSanalyzeR/man/writeReportHTSA.Rd:8: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpiSxY7M/R.INSTALL24ac4f53714/HTSanalyzeR/man/writeReportHTSA.Rd:17: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpiSxY7M/R.INSTALL24ac4f53714/HTSanalyzeR/man/writeReportHTSA.Rd:20: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpiSxY7M/R.INSTALL24ac4f53714/HTSanalyzeR/man/writeReportHTSA.Rd:56: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpiSxY7M/R.INSTALL24ac4f53714/HTSanalyzeR/man/writeReportHTSA.Rd:57: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import 'igraph::union' by 'GSEABase::union' when loading 'HTSanalyzeR'
In R CMD INSTALL
install for x64
* installing *source* package 'HTSanalyzeR' ...
** testing if installed package can be loaded
Warning: replacing previous import 'igraph::union' by 'GSEABase::union' when loading 'HTSanalyzeR'
* MD5 sums
packaged installation of 'HTSanalyzeR' as HTSanalyzeR_2.34.1.zip
* DONE (HTSanalyzeR)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'HTSanalyzeR' successfully unpacked and MD5 sums checked
In R CMD INSTALL