Package: HilbertCurve

Version: 1.12.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:HilbertCurve.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings HilbertCurve_1.12.0.tar.gz

StartedAt: 2019-04-16 00:33:51 -0400 (Tue, 16 Apr 2019)

EndedAt: 2019-04-16 00:36:37 -0400 (Tue, 16 Apr 2019)

EllapsedTime: 166.1 seconds

RetCode: 0

Status:  OK

CheckDir: HilbertCurve.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:HilbertCurve.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings HilbertCurve_1.12.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.8-bioc/meat/HilbertCurve.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HilbertCurve/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HilbertCurve’ version ‘1.12.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HilbertCurve’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                                      user system elapsed
hc_layer-HilbertCurve-method        19.037  0.701  19.906
hc_layer-GenomicHilbertCurve-method 12.121  0.208  12.463
GenomicHilbertCurve                  9.724  0.133  10.744
hc_png-HilbertCurve-method           7.377  0.215   7.742
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘test-all.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL HilbertCurve
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’
* installing *source* package ‘HilbertCurve’ ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘HilbertCurve.Rmd’ 
** testing if installed package can be loaded
* DONE (HilbertCurve)

R version 3.5.3 (2019-03-11) -- "Great Truth"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin15.6.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> suppressWarnings(suppressPackageStartupMessages(library(HilbertCurve)))
> 
> test_check("HilbertCurve")
══ testthat results  ═══════════════════════════════════════════════════════════
OK: 8 SKIPPED: 0 FAILED: 0
> 
> proc.time()
   user  system elapsed 
  4.830   0.301   5.257 

name	user	system	elapsed
GenomicHilbertCurve-class	0	0	0
GenomicHilbertCurve	9.724	0.133	10.744
HilbertCurve-class	0.000	0.001	0.000
HilbertCurve	1.048	0.014	1.069
default_overlay	0	0	0
hc_centered_text-HilbertCurve-method	0.152	0.001	0.155
hc_layer-GenomicHilbertCurve-method	12.121	0.208	12.463
hc_layer-HilbertCurve-method	19.037	0.701	19.906
hc_layer-dispatch	0	0	0
hc_level-HilbertCurve-method	0.029	0.002	0.032
hc_map-GenomicHilbertCurve-method	2.930	0.022	2.981
hc_normal_points-HilbertCurve-method	0.001	0.000	0.000
hc_offset-HilbertCurve-method	0.019	0.001	0.021
hc_png-HilbertCurve-method	7.377	0.215	7.742
hc_points-GenomicHilbertCurve-method	0.563	0.010	0.574
hc_points-HilbertCurve-method	0.923	0.010	0.972
hc_points-dispatch	0	0	0
hc_polygon-GenomicHilbertCurve-method	0.595	0.007	0.629
hc_polygon-HilbertCurve-method	0.122	0.003	0.124
hc_polygon-dispatch	0	0	0
hc_rect-GenomicHilbertCurve-method	0.472	0.007	0.481
hc_rect-HilbertCurve-method	0.113	0.003	0.116
hc_rect-dispatch	0.000	0.001	0.001
hc_segmented_points-HilbertCurve-method	0	0	0
hc_segments-GenomicHilbertCurve-method	0.842	0.008	0.889
hc_segments-HilbertCurve-method	0.139	0.003	0.143
hc_segments-dispatch	0.000	0.000	0.001
hc_text-GenomicHilbertCurve-method	0.290	0.007	0.298
hc_text-HilbertCurve-method	0.191	0.004	0.195
hc_text-dispatch	0.000	0.001	0.000
show-HilbertCurve-method	0.011	0.000	0.012
unzoom-HilbertCurve-method	0.011	0.000	0.012
zoom-HilbertCurve-method	0.012	0.001	0.012