Package: IMPCdata

Version: 1.18.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:IMPCdata.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings IMPCdata_1.18.0.tar.gz

StartedAt: 2019-04-16 00:41:09 -0400 (Tue, 16 Apr 2019)

EndedAt: 2019-04-16 00:43:24 -0400 (Tue, 16 Apr 2019)

EllapsedTime: 135.1 seconds

RetCode: 0

Status:  OK

CheckDir: IMPCdata.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:IMPCdata.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings IMPCdata_1.18.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.8-bioc/meat/IMPCdata.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘IMPCdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘IMPCdata’ version ‘1.18.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘IMPCdata’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
getIMPCDataset  0.896  0.033  27.748
getPhenCenters  0.431  0.027  13.542
printStrains    0.351  0.021   9.350
getStrains      0.349  0.021  10.365
getAlleles      0.239  0.020   5.827
printProcedures 0.206  0.013   5.753
getProcedures   0.202  0.013   5.370
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL IMPCdata
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’
* installing *source* package ‘IMPCdata’ ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (IMPCdata)

name	user	system	elapsed
getAlleles	0.239	0.020	5.827
getGenes	0.213	0.013	3.766
getIMPCDataset	0.896	0.033	27.748
getIMPCTable	0.157	0.015	3.374
getName	0.033	0.003	0.736
getParameters	0.214	0.013	3.956
getPhenCenters	0.431	0.027	13.542
getPipelines	0.176	0.010	4.436
getProcedures	0.202	0.013	5.370
getStrains	0.349	0.021	10.365
getZygosities	0.036	0.003	0.781
printAlleles	0.199	0.012	4.203
printGenes	0.205	0.012	4.120
printParameters	0.215	0.013	4.663
printPhenCenters	0.065	0.005	3.989
printPipelines	0.162	0.011	4.967
printProcedures	0.206	0.013	5.753
printStrains	0.351	0.021	9.350