| Back to Multiple platform build/check report for BioC 3.8 |
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This page was generated on 2019-04-13 11:28:10 -0400 (Sat, 13 Apr 2019).
| Package 794/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
Daniel Gusenleitner
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | ERROR | skipped | |||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | ERROR | skipped | skipped | |||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped |
| Package: IrisSpatialFeatures |
| Version: 1.6.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/IrisSpatialFeatures_1.6.0.tar.gz && rm -rf IrisSpatialFeatures.buildbin-libdir && mkdir IrisSpatialFeatures.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=IrisSpatialFeatures.buildbin-libdir IrisSpatialFeatures_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL IrisSpatialFeatures_1.6.0.zip && rm IrisSpatialFeatures_1.6.0.tar.gz IrisSpatialFeatures_1.6.0.zip |
| StartedAt: 2019-04-12 20:36:15 -0400 (Fri, 12 Apr 2019) |
| EndedAt: 2019-04-12 20:37:58 -0400 (Fri, 12 Apr 2019) |
| EllapsedTime: 103.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/IrisSpatialFeatures_1.6.0.tar.gz && rm -rf IrisSpatialFeatures.buildbin-libdir && mkdir IrisSpatialFeatures.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=IrisSpatialFeatures.buildbin-libdir IrisSpatialFeatures_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL IrisSpatialFeatures_1.6.0.zip && rm IrisSpatialFeatures_1.6.0.tar.gz IrisSpatialFeatures_1.6.0.zip
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install for i386
* installing *source* package 'IrisSpatialFeatures' ...
** libs
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c interaction.cpp -o interaction.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c masking.cpp -o masking.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o IrisSpatialFeatures.dll tmp.def RcppExports.o interaction.o masking.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/IrisSpatialFeatures.buildbin-libdir/IrisSpatialFeatures/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'IrisSpatialFeatures'
finding HTML links ... done
Coordinate-class html
ImageSet-class html
IrisSpatialFeatures-package html
IrisSpatialFeatures_data html
Sample-class html
as.data.frame html
collapse_markers html
extract_ROI html
extract_features html
extract_interactions html
extract_mask html
extract_nearest_neighbor html
extract_proximity html
feature_selection html
get_all_interactions html
get_all_nearest_neighbors html
get_all_proximities html
get_count_ratios html
get_counts_per_mm2 html
get_counts_per_mm2_noncollapsed html
get_interactions html
get_nearest_neighbors html
get_proximities html
interaction_maps html
neighbor_ray_plot html
overview_plot html
plot html
plot_interactions html
plot_nearest_neighbor html
plot_proximities html
raw_data-class html
rayplot_single_coordinate html
read_raw html
threshold_dataset html
** building package indices
** installing vignettes
'IrisSpatialFeatures.Rmd' using 'UTF-8'
** testing if installed package can be loaded
Warning: Package 'IrisSpatialFeatures' is deprecated and will be removed from
Bioconductor version 3.9
In R CMD INSTALL
install for x64
* installing *source* package 'IrisSpatialFeatures' ...
** libs
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c interaction.cpp -o interaction.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c masking.cpp -o masking.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o IrisSpatialFeatures.dll tmp.def RcppExports.o interaction.o masking.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/IrisSpatialFeatures.buildbin-libdir/IrisSpatialFeatures/libs/x64
** testing if installed package can be loaded
Warning: Package 'IrisSpatialFeatures' is deprecated and will be removed from
Bioconductor version 3.9
* MD5 sums
packaged installation of 'IrisSpatialFeatures' as IrisSpatialFeatures_1.6.0.zip
* DONE (IrisSpatialFeatures)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'IrisSpatialFeatures' successfully unpacked and MD5 sums checked
In R CMD INSTALL