Stefano de Pretis
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/LowMACA |
| Branch: RELEASE_3_8 |
| Last Commit: c58adb1 |
| Last Changed Date: 2019-03-08 13:26:16 -0400 (Fri, 08 Mar 2019) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:25:06 -0400 (Sat, 13 Apr 2019).
| Package 848/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| LowMACA 1.12.1 Stefano de Pretis
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: LowMACA |
| Version: 1.12.1 |
| Command: C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:LowMACA.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings LowMACA_1.12.1.tar.gz |
| StartedAt: 2019-04-13 03:25:57 -0400 (Sat, 13 Apr 2019) |
| EndedAt: 2019-04-13 03:45:22 -0400 (Sat, 13 Apr 2019) |
| EllapsedTime: 1165.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: LowMACA.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:LowMACA.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings LowMACA_1.12.1.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.8-bioc/meat/LowMACA.Rcheck'
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'LowMACA/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'LowMACA' version '1.12.1'
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'LowMACA' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
allPfamAnalysis 153.97 3.47 169.69
lfmSingleSequence 99.21 1.78 107.15
setup 30.72 4.35 61.50
LowMACA-class 14.39 2.64 31.89
LowMACA-package 10.37 1.21 21.47
getMutations 2.91 0.42 5.28
lmPlotSingleSequence 2.59 0.15 7.91
alignSequences 2.47 0.16 20.14
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
allPfamAnalysis 163.56 3.35 179.10
lfmSingleSequence 81.66 1.90 89.48
setup 15.71 3.44 46.18
LowMACA-class 15.17 2.60 31.80
LowMACA-package 6.98 1.12 17.96
getMutations 2.83 0.39 5.17
lmPlotSingleSequence 2.43 0.11 8.00
alignSequences 2.30 0.03 20.23
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
LowMACA.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/LowMACA_1.12.1.tar.gz && rm -rf LowMACA.buildbin-libdir && mkdir LowMACA.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=LowMACA.buildbin-libdir LowMACA_1.12.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL LowMACA_1.12.1.zip && rm LowMACA_1.12.1.tar.gz LowMACA_1.12.1.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 109k 100 109k 0 0 2967k 0 --:--:-- --:--:-- --:--:-- 3321k
install for i386
* installing *source* package 'LowMACA' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'LowMACA'
finding HTML links ... done
BLOSUM62 html
LowMACA-class html
LowMACA-package html
LowMACA_AML html
alignSequences html
allPfamAnalysis html
bpAll html
entropy html
getMutations html
lfm html
lfmSingleSequence html
lmAlignment html
lmEntropy html
lmMutations html
lmObj html
lmParams html
lmPlot html
lmPlotSingleSequence html
mapMutations html
newLowMACA html
nullProfile html
parallelize html
protter html
setup html
showTumorType html
** building package indices
** installing vignettes
** testing if installed package can be loaded
Checking if clustalo is in the PATH...
Checking clustalo Version...
Checking perl installation...
Checking perl modules XML::Simple and LWP...
In R CMD INSTALL
install for x64
* installing *source* package 'LowMACA' ...
** testing if installed package can be loaded
Checking if clustalo is in the PATH...
Checking clustalo Version...
Checking perl installation...
Checking perl modules XML::Simple and LWP...
* MD5 sums
packaged installation of 'LowMACA' as LowMACA_1.12.1.zip
* DONE (LowMACA)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'LowMACA' successfully unpacked and MD5 sums checked
In R CMD INSTALL
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LowMACA.Rcheck/examples_i386/LowMACA-Ex.timings
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LowMACA.Rcheck/examples_x64/LowMACA-Ex.timings
|