Christian Mertes
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/OUTRIDER |
| Branch: RELEASE_3_8 |
| Last Commit: 18fcd8e |
| Last Changed Date: 2019-03-18 14:04:22 -0400 (Mon, 18 Mar 2019) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:29:30 -0400 (Sat, 13 Apr 2019).
| Package 1108/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| OUTRIDER 1.0.4 Christian Mertes
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: OUTRIDER |
| Version: 1.0.4 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/OUTRIDER_1.0.4.tar.gz && rm -rf OUTRIDER.buildbin-libdir && mkdir OUTRIDER.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OUTRIDER.buildbin-libdir OUTRIDER_1.0.4.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL OUTRIDER_1.0.4.zip && rm OUTRIDER_1.0.4.tar.gz OUTRIDER_1.0.4.zip |
| StartedAt: 2019-04-12 20:11:48 -0400 (Fri, 12 Apr 2019) |
| EndedAt: 2019-04-12 20:13:42 -0400 (Fri, 12 Apr 2019) |
| EllapsedTime: 114.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/OUTRIDER_1.0.4.tar.gz && rm -rf OUTRIDER.buildbin-libdir && mkdir OUTRIDER.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OUTRIDER.buildbin-libdir OUTRIDER_1.0.4.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL OUTRIDER_1.0.4.zip && rm OUTRIDER_1.0.4.tar.gz OUTRIDER_1.0.4.zip
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install for i386
* installing *source* package 'OUTRIDER' ...
** libs
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppArmadillo/include" -I"C:/extsoft/include" -fopenmp -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppArmadillo/include" -I"C:/extsoft/include" -fopenmp -O2 -Wall -mtune=generic -c loss_n_gradient_functions.cpp -o loss_n_gradient_functions.o
loss_n_gradient_functions.cpp: In function 'double truncLogLiklihoodD(arma::vec, arma::mat, arma::vec, arma::vec, arma::vec, double, arma::vec)':
loss_n_gradient_functions.cpp:41:19: warning: unused variable 'c' [-Wunused-variable]
double b, ll, c;
^
loss_n_gradient_functions.cpp: In function 'arma::vec gradientD(arma::vec, arma::mat, arma::vec, arma::vec, arma::vec, double, arma::vec)':
loss_n_gradient_functions.cpp:68:15: warning: unused variable 'c' [-Wunused-variable]
double b, c;
^
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o OUTRIDER.dll tmp.def RcppExports.o loss_n_gradient_functions.o -fopenmp -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lRlapack -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/OUTRIDER.buildbin-libdir/OUTRIDER/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'OUTRIDER'
finding HTML links ... done
OUTRIDER html
OutriderDataSet-class html
aberrant html
computeGeneLength html
computeLatentSpace html
computePvalues html
computeZscores html
controlForConfounders html
counts html
estimateBestQ html
filterExpression html
findEncodingDim html
fit html
fpkm html
getter_setter_functions html
makeExampleOutriderDataSet html
normalizationFactors html
plotFunctions html
results html
sampleExclusionMask html
sizeFactors html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'OUTRIDER' ...
** libs
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppArmadillo/include" -I"C:/extsoft/include" -fopenmp -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppArmadillo/include" -I"C:/extsoft/include" -fopenmp -O2 -Wall -mtune=generic -c loss_n_gradient_functions.cpp -o loss_n_gradient_functions.o
loss_n_gradient_functions.cpp: In function 'double truncLogLiklihoodD(arma::vec, arma::mat, arma::vec, arma::vec, arma::vec, double, arma::vec)':
loss_n_gradient_functions.cpp:41:19: warning: unused variable 'c' [-Wunused-variable]
double b, ll, c;
^
loss_n_gradient_functions.cpp: In function 'arma::vec gradientD(arma::vec, arma::mat, arma::vec, arma::vec, arma::vec, double, arma::vec)':
loss_n_gradient_functions.cpp:68:15: warning: unused variable 'c' [-Wunused-variable]
double b, c;
^
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o OUTRIDER.dll tmp.def RcppExports.o loss_n_gradient_functions.o -fopenmp -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lRlapack -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/OUTRIDER.buildbin-libdir/OUTRIDER/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'OUTRIDER' as OUTRIDER_1.0.4.zip
* DONE (OUTRIDER)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'OUTRIDER' successfully unpacked and MD5 sums checked
In R CMD INSTALL