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INSTALL report for OmaDB on tokay1

This page was generated on 2019-04-13 11:28:38 -0400 (Sat, 13 Apr 2019).

Package 1079/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
OmaDB 1.2.2
Klara Kaleb , Adrian Altenhoff
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/OmaDB
Branch: RELEASE_3_8
Last Commit: 3696142
Last Changed Date: 2019-01-04 07:33:24 -0400 (Fri, 04 Jan 2019)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: OmaDB
Version: 1.2.2
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/OmaDB_1.2.2.tar.gz && rm -rf OmaDB.buildbin-libdir && mkdir OmaDB.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OmaDB.buildbin-libdir OmaDB_1.2.2.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL OmaDB_1.2.2.zip && rm OmaDB_1.2.2.tar.gz OmaDB_1.2.2.zip
StartedAt: 2019-04-12 19:36:35 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 19:37:27 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 51.9 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/OmaDB_1.2.2.tar.gz && rm -rf OmaDB.buildbin-libdir && mkdir OmaDB.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OmaDB.buildbin-libdir OmaDB_1.2.2.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL OmaDB_1.2.2.zip && rm OmaDB_1.2.2.tar.gz OmaDB_1.2.2.zip
###
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install for i386

* installing *source* package 'OmaDB' ...
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'OmaDB'
    finding HTML links ... done
    OmaDB-package                           html  
    bulkRetrieve                            html  
    cash-.omadb_obj                         html  
    formatTopGO                             html  
    getAnnotation                           html  
    getAttribute                            html  
    getData                                 html  
    getGenomeAlignment                      html  
    getHOG                                  html  
    getInfo                                 html  
    getObjectAttributes                     html  
    getTaxonomy                             html  
    getTopGO                                html  
    getTree                                 html  
    getXref                                 html  
    group                                   html  
    hog                                     html  
    mapSequence                             html  
    orthologs                               html  
    pairs                                   html  
    protein                                 html  
    resolveURL                              html  
    sequence_annotation                     html  
    sequence_map                            html  
    taxonomy                                html  
    xref                                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'OmaDB' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'OmaDB' as OmaDB_1.2.2.zip
* DONE (OmaDB)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'OmaDB' successfully unpacked and MD5 sums checked
In R CMD INSTALL