Ramon Diaz-Uriarte
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/OncoSimulR |
| Branch: RELEASE_3_8 |
| Last Commit: 10d3d45 |
| Last Changed Date: 2018-10-30 11:41:54 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:24:05 -0400 (Sat, 13 Apr 2019).
| Package 1090/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| OncoSimulR 2.12.0 Ramon Diaz-Uriarte
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: OncoSimulR |
| Version: 2.12.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/OncoSimulR_2.12.0.tar.gz && rm -rf OncoSimulR.buildbin-libdir && mkdir OncoSimulR.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OncoSimulR.buildbin-libdir OncoSimulR_2.12.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL OncoSimulR_2.12.0.zip && rm OncoSimulR_2.12.0.tar.gz OncoSimulR_2.12.0.zip |
| StartedAt: 2019-04-12 19:35:10 -0400 (Fri, 12 Apr 2019) |
| EndedAt: 2019-04-12 19:37:22 -0400 (Fri, 12 Apr 2019) |
| EllapsedTime: 131.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/OncoSimulR_2.12.0.tar.gz && rm -rf OncoSimulR.buildbin-libdir && mkdir OncoSimulR.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OncoSimulR.buildbin-libdir OncoSimulR_2.12.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL OncoSimulR_2.12.0.zip && rm OncoSimulR_2.12.0.tar.gz OncoSimulR_2.12.0.zip
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install for i386
* installing *source* package 'OncoSimulR' ...
** libs
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c BNB_nr.cpp -o BNB_nr.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c BNB_v1.cpp -o BNB_v1.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c OncoSimulR_init.c -o OncoSimulR_init.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c accessible_genotypes.cpp -o accessible_genotypes.o
accessible_genotypes.cpp: In function 'Rcpp::IntegerVector accessibleGenotypesPeaksLandscape(Rcpp::IntegerMatrix, Rcpp::NumericVector, Rcpp::IntegerVector, double, bool)':
accessible_genotypes.cpp:224:7: warning: unused variable 'numMutdiff' [-Wunused-variable]
int numMutdiff = 0;
^
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c bnb_common.cpp -o bnb_common.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c new_restrict.cpp -o new_restrict.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c new_restrict_former_print_utils.cpp -o new_restrict_former_print_utils.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o OncoSimulR.dll tmp.def BNB_nr.o BNB_v1.o OncoSimulR_init.o RcppExports.o accessible_genotypes.o bnb_common.o new_restrict.o new_restrict_former_print_utils.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/OncoSimulR.buildbin-libdir/OncoSimulR/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'OncoSimulR'
finding HTML links ... done
OncoSimulWide2Long html
POM html
allFitnessEffects html
benchmarks html
evalAllGenotypes html
example-missing-drivers html
examplePosets html
examplesFitnessEffects html
mcfLs html
oncoSimulIndiv html
plot.fitnessEffects html
plot.oncosimul html
finding level-2 HTML links ... done
plotClonePhylog html
plotFitnessLandscape html
plotPoset html
poset html
rfitness html
samplePop html
simOGraph html
to_Magellan html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'OncoSimulR' ...
** libs
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c BNB_nr.cpp -o BNB_nr.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c BNB_v1.cpp -o BNB_v1.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c OncoSimulR_init.c -o OncoSimulR_init.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c accessible_genotypes.cpp -o accessible_genotypes.o
accessible_genotypes.cpp: In function 'Rcpp::IntegerVector accessibleGenotypesPeaksLandscape(Rcpp::IntegerMatrix, Rcpp::NumericVector, Rcpp::IntegerVector, double, bool)':
accessible_genotypes.cpp:224:7: warning: unused variable 'numMutdiff' [-Wunused-variable]
int numMutdiff = 0;
^
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c bnb_common.cpp -o bnb_common.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c new_restrict.cpp -o new_restrict.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c new_restrict_former_print_utils.cpp -o new_restrict_former_print_utils.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o OncoSimulR.dll tmp.def BNB_nr.o BNB_v1.o OncoSimulR_init.o RcppExports.o accessible_genotypes.o bnb_common.o new_restrict.o new_restrict_former_print_utils.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/OncoSimulR.buildbin-libdir/OncoSimulR/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'OncoSimulR' as OncoSimulR_2.12.0.zip
* DONE (OncoSimulR)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'OncoSimulR' successfully unpacked and MD5 sums checked
In R CMD INSTALL