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INSTALL report for RITAN on tokay1

This page was generated on 2019-04-13 11:27:51 -0400 (Sat, 13 Apr 2019).

Package 1316/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RITAN 1.6.0
Michael Zimmermann
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/RITAN
Branch: RELEASE_3_8
Last Commit: 581a092
Last Changed Date: 2018-10-30 11:42:05 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: RITAN
Version: 1.6.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/RITAN_1.6.0.tar.gz && rm -rf RITAN.buildbin-libdir && mkdir RITAN.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RITAN.buildbin-libdir RITAN_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL RITAN_1.6.0.zip && rm RITAN_1.6.0.tar.gz RITAN_1.6.0.zip
StartedAt: 2019-04-12 20:26:41 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 20:27:13 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 31.6 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/RITAN_1.6.0.tar.gz && rm -rf RITAN.buildbin-libdir && mkdir RITAN.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RITAN.buildbin-libdir RITAN_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL RITAN_1.6.0.zip && rm RITAN_1.6.0.tar.gz RITAN_1.6.0.zip
###
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install for i386

* installing *source* package 'RITAN' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'gplots::plotCI' by 'plotrix::plotCI' when loading 'RITAN'
Warning: replacing previous import 'gplots::lowess' by 'stats::lowess' when loading 'RITAN'
Warning: replacing previous import 'igraph::spectrum' by 'stats::spectrum' when loading 'RITAN'
Warning: replacing previous import 'igraph::decompose' by 'stats::decompose' when loading 'RITAN'
** help
*** installing help indices
  converting help for package 'RITAN'
    finding HTML links ... done
    as.graph                                html  
    check_any_net_input                     html  
    check_net_input                         html  
    enrichment_symbols                      html  
    geneset_overlap                         html  
    icon_test                               html  
    load_all_protein_coding_symbols         html  
    load_geneset_symbols                    html  
    network_overlap                         html  
    plot.term_enrichment                    html  
    plot.term_enrichment_by_subset          html  
    readGMT                                 html  
    readSIF                                 html  
    resource_reduce                         html  
    show_active_genesets_hist               html  
    summary.term_enrichment                 html  
    summary.term_enrichment_by_subset       html  
    term_enrichment                         html  
    term_enrichment_by_subset               html  
    vac1.day0vs31.de.genes                  html  
    vac1.day0vs56.de.genes                  html  
    vac2.day0vs31.de.genes                  html  
    vac2.day0vs56.de.genes                  html  
    writeGMT                                html  
    write_simple_table                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import 'gplots::plotCI' by 'plotrix::plotCI' when loading 'RITAN'
Warning: replacing previous import 'gplots::lowess' by 'stats::lowess' when loading 'RITAN'
Warning: replacing previous import 'igraph::spectrum' by 'stats::spectrum' when loading 'RITAN'
Warning: replacing previous import 'igraph::decompose' by 'stats::decompose' when loading 'RITAN'
In R CMD INSTALL

install for x64

* installing *source* package 'RITAN' ...
** testing if installed package can be loaded
Warning: replacing previous import 'gplots::plotCI' by 'plotrix::plotCI' when loading 'RITAN'
Warning: replacing previous import 'igraph::decompose' by 'stats::decompose' when loading 'RITAN'
Warning: replacing previous import 'gplots::lowess' by 'stats::lowess' when loading 'RITAN'
Warning: replacing previous import 'igraph::spectrum' by 'stats::spectrum' when loading 'RITAN'
* MD5 sums
packaged installation of 'RITAN' as RITAN_1.6.0.zip
* DONE (RITAN)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'RITAN' successfully unpacked and MD5 sums checked
In R CMD INSTALL