Package: RedeR

Version: 1.30.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:RedeR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings RedeR_1.30.0.tar.gz

StartedAt: 2019-04-16 02:15:44 -0400 (Tue, 16 Apr 2019)

EndedAt: 2019-04-16 02:16:30 -0400 (Tue, 16 Apr 2019)

EllapsedTime: 45.2 seconds

RetCode: 0

Status:  OK

CheckDir: RedeR.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:RedeR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings RedeR_1.30.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.8-bioc/meat/RedeR.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RedeR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RedeR’ version ‘1.30.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RedeR’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.1Mb
  sub-directories of 1Mb or more:
    data   3.3Mb
    java   4.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.8-bioc/meat/RedeR.Rcheck/00check.log’
for details.

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL RedeR
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’
* installing *source* package ‘RedeR’ ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RedeR)

name	user	system	elapsed
RedPort-class	0.005	0.001	0.005
RedPort	0.001	0.000	0.001
RedeR.data	0.502	0.041	0.548
addEdgeBetweenContainers	0.015	0.001	0.016
addEdges	0.011	0.000	0.012
addGraph	0.012	0.000	0.014
addLegend	0.012	0.000	0.013
addNodes	0.012	0.000	0.012
addSeries	0.024	0.002	0.027
addSubgraph	0.012	0.001	0.013
addSubgraph.list	0.011	0.000	0.011
att	0.031	0.002	0.034
calld	0.005	0.000	0.006
cea	0.011	0.001	0.012
deSelectEdges	0.010	0.001	0.011
deSelectGraph	0.009	0.001	0.010
deSelectNodes	0.010	0.001	0.011
deleteEdges	0.013	0.001	0.014
deleteNodes	0.010	0.001	0.010
deleteSelectedEdges	0.014	0.001	0.015
deleteSelectedNodes	0.015	0.000	0.015
duplicateGraph	0.013	0.000	0.014
exitd	0	0	0
getContainerComponets	0.014	0.001	0.014
getEdgeIDs	0.012	0.001	0.013
getEdges	0.009	0.001	0.011
getGraph	0.013	0.001	0.013
getNodeIDs	0.013	0.001	0.014
getNodes	0.011	0.001	0.012
getSourceEdgeIDs	0.008	0.000	0.009
getTargetEdgeIDs	0.007	0.000	0.008
gtoy.rm	0.001	0.000	0.001
isDynamicsActive	0.001	0.000	0.001
mergeNodes	0.011	0.001	0.012
mergeOutEdges	0.011	0.001	0.012
nestNodes	0.014	0.001	0.015
nesthc	1.351	0.076	1.443
ping	0.001	0.000	0.001
relax	0.013	0.001	0.014
resetd	0.000	0.000	0.001
selectAllEdges	0.014	0.002	0.016
selectAllNodes	0.011	0.001	0.013
selectEdges	0.009	0.001	0.010
selectGraph	0.014	0.001	0.015
selectNodes	0.013	0.000	0.013
setArrowDirection	0.013	0.001	0.014
subg	0.047	0.005	0.052
updateContainerSize	0.009	0.001	0.011
updateGraph	0.009	0.001	0.011
version	0.001	0.001	0.001