Markus List
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/SPONGE |
| Branch: RELEASE_3_8 |
| Last Commit: 4123d4f |
| Last Changed Date: 2018-10-30 11:42:06 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:28:12 -0400 (Sat, 13 Apr 2019).
| Package 1498/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| SPONGE 1.4.0 Markus List
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | NA | |||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: SPONGE |
| Version: 1.4.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/SPONGE_1.4.0.tar.gz && rm -rf SPONGE.buildbin-libdir && mkdir SPONGE.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SPONGE.buildbin-libdir SPONGE_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL SPONGE_1.4.0.zip && rm SPONGE_1.4.0.tar.gz SPONGE_1.4.0.zip |
| StartedAt: 2019-04-12 20:28:46 -0400 (Fri, 12 Apr 2019) |
| EndedAt: 2019-04-12 20:29:46 -0400 (Fri, 12 Apr 2019) |
| EllapsedTime: 60.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/SPONGE_1.4.0.tar.gz && rm -rf SPONGE.buildbin-libdir && mkdir SPONGE.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SPONGE.buildbin-libdir SPONGE_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL SPONGE_1.4.0.zip && rm SPONGE_1.4.0.tar.gz SPONGE_1.4.0.zip
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install for i386
Warning in untar2(tarfile, files, list, exdir, restore_times) :
failed to copy 'SPONGE/vignettes/SPONGE.Rmd' to 'SPONGE/README.md'
* installing *source* package 'SPONGE' ...
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'SPONGE'
finding HTML links ... done
ceRNA_interactions html
check_and_convert_expression_data html
fn_elasticnet html
fn_gene_miRNA_F_test html
fn_get_model_coef html
fn_get_rss html
fn_get_shared_miRNAs html
gene_expr html
genes_pairwise_combinations html
mir_expr html
mir_interactions html
mircode_ensg html
mircode_symbol html
precomputed_cov_matrices html
precomputed_null_model html
sample_zero_mscor_cov html
sample_zero_mscor_data html
sponge html
sponge_build_null_model html
sponge_compute_p_values html
sponge_edge_centralities html
sponge_gene_miRNA_interaction_filter html
sponge_network html
sponge_node_centralities html
sponge_plot_network html
sponge_plot_network_centralities html
sponge_plot_simulation_results html
sponge_run_benchmark html
sponge_subsampling html
targetscan_ensg html
targetscan_symbol html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
Warning in untar2(tarfile, files, list, exdir, restore_times) :
failed to copy 'SPONGE/vignettes/SPONGE.Rmd' to 'SPONGE/README.md'
* installing *source* package 'SPONGE' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SPONGE' as SPONGE_1.4.0.zip
* DONE (SPONGE)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'SPONGE' successfully unpacked and MD5 sums checked
In R CMD INSTALL