Liuba Nausicaa Martino
| Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019) |
| URL: https://git.bioconductor.org/packages/TFARM |
| Branch: RELEASE_3_8 |
| Last Commit: ac05e23 |
| Last Changed Date: 2018-10-30 11:42:06 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-16 11:53:00 -0400 (Tue, 16 Apr 2019).
| Package 1554/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| TFARM 1.4.0 Liuba Nausicaa Martino
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | [ OK ] | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: TFARM |
| Version: 1.4.0 |
| Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:TFARM.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings TFARM_1.4.0.tar.gz |
| StartedAt: 2019-04-16 03:23:06 -0400 (Tue, 16 Apr 2019) |
| EndedAt: 2019-04-16 03:24:59 -0400 (Tue, 16 Apr 2019) |
| EllapsedTime: 112.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: TFARM.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:TFARM.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings TFARM_1.4.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.8-bioc/meat/TFARM.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘TFARM/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘TFARM’ version ‘1.4.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘TFARM’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
rulesTF0 5.228 0.004 5.233
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
TFARM.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL TFARM ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’ * installing *source* package ‘TFARM’ ... ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (TFARM)
TFARM.Rcheck/TFARM-Ex.timings
| name | user | system | elapsed | |
| DELTA | 0.004 | 0.004 | 0.010 | |
| IComp | 0.036 | 0.004 | 0.041 | |
| IMP | 0.000 | 0.000 | 0.002 | |
| IMP_Z | 0.000 | 0.004 | 0.001 | |
| IPCA | 0.016 | 0.000 | 0.017 | |
| I_c_2 | 0.004 | 0.000 | 0.001 | |
| MCF7_chr1 | 0.072 | 0.000 | 0.072 | |
| TF_Imp | 0.004 | 0.000 | 0.003 | |
| distribViz | 0.020 | 0.000 | 0.019 | |
| heatI | 0.052 | 0.000 | 0.052 | |
| imp_FOSL2 | 0.000 | 0.000 | 0.002 | |
| items | 0 | 0 | 0 | |
| itemset | 0.000 | 0.000 | 0.001 | |
| p_TFs | 0.004 | 0.000 | 0.001 | |
| presAbs | 0.152 | 0.000 | 0.153 | |
| r_FOSL2 | 0.004 | 0.000 | 0.002 | |
| r_TEAD4 | 0.004 | 0.000 | 0.003 | |
| r_noFOSL2 | 0.000 | 0.000 | 0.002 | |
| rulesGen | 0.748 | 0.000 | 0.750 | |
| rulesTF | 0.132 | 0.000 | 0.132 | |
| rulesTF0 | 5.228 | 0.004 | 5.233 | |