R. Taylor Raborn
| Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019) |
| URL: https://git.bioconductor.org/packages/TSRchitect |
| Branch: RELEASE_3_8 |
| Last Commit: eea6a50 |
| Last Changed Date: 2018-11-15 19:12:38 -0400 (Thu, 15 Nov 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-16 11:52:47 -0400 (Tue, 16 Apr 2019).
| Package 1596/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| TSRchitect 1.8.9 R. Taylor Raborn
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | [ WARNINGS ] | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: TSRchitect |
| Version: 1.8.9 |
| Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:TSRchitect.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings TSRchitect_1.8.9.tar.gz |
| StartedAt: 2019-04-16 03:33:29 -0400 (Tue, 16 Apr 2019) |
| EndedAt: 2019-04-16 03:36:45 -0400 (Tue, 16 Apr 2019) |
| EllapsedTime: 195.8 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: TSRchitect.Rcheck |
| Warnings: 2 |
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### Running command:
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### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:TSRchitect.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings TSRchitect_1.8.9.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.8-bioc/meat/TSRchitect.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘TSRchitect/DESCRIPTION’ ... OK
* this is package ‘TSRchitect’ version ‘1.8.9’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘TSRchitect’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
File
inst/LICENSE
will install at top-level and is not mentioned in the DESCRIPTION file.
* checking for left-over files ... OK
* checking index information ... WARNING
Empty or missing file ‘demo/00Index’.
See sections ‘The INDEX file’ and ‘Package subdirectories’ in the
‘Writing R Extensions’ manual.
* checking package subdirectories ... WARNING
Subdirectory ‘demo’ contains no demos.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
loadTSSobj-methods 8.524 0.284 9.283
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 WARNINGs, 1 NOTE
See
‘/home/biocbuild/bbs-3.8-bioc/meat/TSRchitect.Rcheck/00check.log’
for details.
TSRchitect.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL TSRchitect ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’ * installing *source* package ‘TSRchitect’ ... ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ‘TSRchitect.Rmd’ using ‘UTF-8’ ‘TSRchitectUsersGuide.Rmd’ using ‘UTF-8’ Warning in res[i] <- withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), : number of items to replace is not a multiple of replacement length Warning in res[i] <- withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), : number of items to replace is not a multiple of replacement length Warning in res[i] <- withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), : number of items to replace is not a multiple of replacement length Warning in res[i] <- withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), : number of items to replace is not a multiple of replacement length Warning in res[i] <- withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), : number of items to replace is not a multiple of replacement length ** testing if installed package can be loaded * DONE (TSRchitect)
TSRchitect.Rcheck/TSRchitect-Ex.timings
| name | user | system | elapsed | |
| TSRchitectUsersGuide | 0.000 | 0.000 | 0.001 | |
| addAnnotationToTSR-methods | 0.208 | 0.000 | 0.222 | |
| addTagCountsToTSR-methods | 0.060 | 0.000 | 0.062 | |
| cDNAtoBED-methods | 0.124 | 0.024 | 0.232 | |
| createSummarizedExperiment-methods | 0.736 | 0.128 | 0.868 | |
| determineTSR-methods | 0.056 | 0.000 | 0.056 | |
| getBamData-methods | 0.064 | 0.000 | 0.063 | |
| getFileNames-methods | 0.036 | 0.000 | 0.037 | |
| getTSRdata-methods | 0.04 | 0.00 | 0.04 | |
| getTSScountData-methods | 0.044 | 0.000 | 0.042 | |
| getTSStagData-methods | 0.056 | 0.000 | 0.058 | |
| getTitle-methods | 0.036 | 0.000 | 0.040 | |
| importAnnotationExternal-methods | 0.184 | 0.004 | 0.201 | |
| inputToTSS-methods | 0.488 | 0.032 | 0.521 | |
| loadTSSobj-methods | 8.524 | 0.284 | 9.283 | |
| makeGRangesFromTSR-methods | 0.428 | 0.184 | 0.125 | |
| mergeSampleData-methods | 0.336 | 0.004 | 0.343 | |
| processTSS-methods | 0.280 | 0.020 | 0.297 | |
| tssObject | 0 | 0 | 0 | |
| writeTSR-methods | 0.08 | 0.00 | 0.08 | |