Lan Huong Nguyen
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/TimeSeriesExperiment |
| Branch: RELEASE_3_8 |
| Last Commit: 63f9597 |
| Last Changed Date: 2019-01-14 17:39:52 -0400 (Mon, 14 Jan 2019) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:29:54 -0400 (Sat, 13 Apr 2019).
| Package 1563/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| TimeSeriesExperiment 1.0.4 Lan Huong Nguyen
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | NA | |||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: TimeSeriesExperiment |
| Version: 1.0.4 |
| Command: C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:TimeSeriesExperiment.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings TimeSeriesExperiment_1.0.4.tar.gz |
| StartedAt: 2019-04-13 05:55:35 -0400 (Sat, 13 Apr 2019) |
| EndedAt: 2019-04-13 06:01:29 -0400 (Sat, 13 Apr 2019) |
| EllapsedTime: 353.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: TimeSeriesExperiment.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:TimeSeriesExperiment.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings TimeSeriesExperiment_1.0.4.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.8-bioc/meat/TimeSeriesExperiment.Rcheck'
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'TimeSeriesExperiment/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'TimeSeriesExperiment' version '1.0.4'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'TimeSeriesExperiment' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Unexported object imported by a ':::' call: 'S4Vectors:::selectSome'
See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
clusterTimeSeries: no visible binding for global variable 'freq'
clusterTimeSeries: no visible binding for global variable '.'
Undefined global functions or variables:
. freq
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
differentialExpression 10.03 0.03 10.06
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
differentialExpression 11.65 0 11.66
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'C:/Users/biocbuild/bbs-3.8-bioc/meat/TimeSeriesExperiment.Rcheck/00check.log'
for details.
TimeSeriesExperiment.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/TimeSeriesExperiment_1.0.4.tar.gz && rm -rf TimeSeriesExperiment.buildbin-libdir && mkdir TimeSeriesExperiment.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TimeSeriesExperiment.buildbin-libdir TimeSeriesExperiment_1.0.4.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL TimeSeriesExperiment_1.0.4.zip && rm TimeSeriesExperiment_1.0.4.tar.gz TimeSeriesExperiment_1.0.4.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 625k 100 625k 0 0 12.0M 0 --:--:-- --:--:-- --:--:-- 12.9M
install for i386
* installing *source* package 'TimeSeriesExperiment' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'TimeSeriesExperiment'
finding HTML links ... done
TimeSeriesExperiment html
finding level-2 HTML links ... done
addLags html
assignClusterDynamic html
assignClusterStatic html
clusterAssignment html
clusterData html
clusterTimeSeries html
colData html
collapseReplicates html
collapsed-data html
dataToTimeSeries html
differentialExpression html
dimensionReduction html
dot-addLagsToTimeSeries html
dot-imputeData html
endoderm_small html
filterFeatures html
groups html
makeTimeSeries html
makeTimeSeriesExperimentFromExpressionSet
html
makeTimeSeriesExperimentFromSummarizedExperiment
html
meltMatrix html
normalizeData html
pathwayEnrichment html
pipe html
plotEnrichment html
plotHeatmap html
plotSamplePCA html
plotTimeSeries html
plotTimeSeriesClusters html
plotTimeSeriesPCA html
replicates html
rowData html
row_and_colnames html
runPCA html
show-methods html
timeSeries html
timepointDE html
timepoints html
trajectoryDE html
varianceStabilization html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'TimeSeriesExperiment' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'TimeSeriesExperiment' as TimeSeriesExperiment_1.0.4.zip
* DONE (TimeSeriesExperiment)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'TimeSeriesExperiment' successfully unpacked and MD5 sums checked
In R CMD INSTALL
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TimeSeriesExperiment.Rcheck/examples_i386/TimeSeriesExperiment-Ex.timings
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TimeSeriesExperiment.Rcheck/examples_x64/TimeSeriesExperiment-Ex.timings
|