Karim Mezhoud
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/canceR |
| Branch: RELEASE_3_8 |
| Last Commit: da04e10 |
| Last Changed Date: 2019-04-04 15:56:48 -0400 (Thu, 04 Apr 2019) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:24:59 -0400 (Sat, 13 Apr 2019).
| Package 195/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| canceR 1.16.02 Karim Mezhoud
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: canceR |
| Version: 1.16.02 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/canceR_1.16.02.tar.gz && rm -rf canceR.buildbin-libdir && mkdir canceR.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=canceR.buildbin-libdir canceR_1.16.02.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL canceR_1.16.02.zip && rm canceR_1.16.02.tar.gz canceR_1.16.02.zip |
| StartedAt: 2019-04-12 20:37:25 -0400 (Fri, 12 Apr 2019) |
| EndedAt: 2019-04-12 20:38:34 -0400 (Fri, 12 Apr 2019) |
| EllapsedTime: 69.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/canceR_1.16.02.tar.gz && rm -rf canceR.buildbin-libdir && mkdir canceR.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=canceR.buildbin-libdir canceR_1.16.02.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL canceR_1.16.02.zip && rm canceR_1.16.02.tar.gz canceR_1.16.02.zip
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install for i386
* installing *source* package 'canceR' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'igraph::union' by 'GSEABase::union' when loading 'HTSanalyzeR'
** help
*** installing help indices
converting help for package 'canceR'
finding HTML links ... done
ClinicalData html
GSEA.Analyze.Sets html
GSEA.ConsPlot html
GSEA.EnrichmentScore html
GSEA.EnrichmentScore2 html
GSEA.Gct2Frame html
GSEA.Gct2Frame2 html
GSEA.GeneRanking html
GSEA.HeatMapPlot html
GSEA.HeatMapPlot2 html
GSEA.NormalizeCols html
GSEA.NormalizeRows html
GSEA html
GSEA.ReadClsFile html
GSEA.Res2Frame html
GSEA.Threshold html
GSEA.VarFilter html
GSEA.write.gct html
GeneExpMatrix html
Match_GeneList_MSigDB html
OLD.GSEA.EnrichmentScore html
Run.GSEA html
about html
canceR html
canceRHelp html
canceR_Vignette html
cbind.na html
dialogGeneClassifier html
dialogMetOption html
dialogMut html
dialogOptionCircos html
dialogOptionGSEAlm html
dialogOptionPhenoTest html
dialogPlotOption_SkinCor html
dialogSamplingGSEA html
dialogSelectFiles_GSEA html
dialogSpecificMut html
dialogSummary_GSEA html
dialoggetGeneListMSigDB html
displayInTable html
getCases html
getCasesGenProfs html
getCircos html
getClinicData_MultipleCases html
getClinicalDataMatrix html
getCor_ExpCNAMet html
getGCTCLSExample html
getGCT_CLSfiles html
getGSEAlm_Diseases html
getGSEAlm_Variables html
getGenProfs html
getGeneExpMatrix html
getGeneList html
getGeneListExample html
getGeneListFromMSigDB html
getGenesClassifier html
getGenesTree_MultipleCases html
getGenesTree_SingleCase html
getInTable html
getListProfData html
getMSigDB html
getMSigDBExample html
getMSigDBfile html
getMegaProfData html
getMetDataMultipleGenes html
getMutData html
getPhenoTest html
getProfilesDataMultipleGenes html
getProfilesDataSingleGene html
getSpecificMut html
getSummaryGSEA html
getSurvival html
getTextWin html
geteSet html
modalDialog html
myGlobalEnv html
plotModel html
plot_1Gene_2GenProfs html
plot_2Genes_1GenProf html
rbind.na html
setWorkspace html
testCheckedCaseGenProf html
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import 'igraph::union' by 'GSEABase::union' when loading 'HTSanalyzeR'
In R CMD INSTALL
install for x64
* installing *source* package 'canceR' ...
** testing if installed package can be loaded
Warning: replacing previous import 'igraph::union' by 'GSEABase::union' when loading 'HTSanalyzeR'
* MD5 sums
packaged installation of 'canceR' as canceR_1.16.02.zip
* DONE (canceR)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'canceR' successfully unpacked and MD5 sums checked
In R CMD INSTALL