Alicia Schep
| Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019) |
| URL: https://git.bioconductor.org/packages/chromVAR |
| Branch: RELEASE_3_8 |
| Last Commit: e185549 |
| Last Changed Date: 2019-01-04 13:14:02 -0400 (Fri, 04 Jan 2019) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-16 12:01:43 -0400 (Tue, 16 Apr 2019).
| Package 261/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| chromVAR 1.4.1 Alicia Schep
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | [ OK ] | |
| Package: chromVAR |
| Version: 1.4.1 |
| Command: rm -rf chromVAR.buildbin-libdir && mkdir chromVAR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh chromVAR_1.4.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R chromVAR.buildbin-libdir |
| StartedAt: 2019-04-16 03:50:33 -0400 (Tue, 16 Apr 2019) |
| EndedAt: 2019-04-16 03:52:09 -0400 (Tue, 16 Apr 2019) |
| EllapsedTime: 96.2 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: chromVAR_1.4.1.tgz |
| PackageFileSize: 1.833 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf chromVAR.buildbin-libdir && mkdir chromVAR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh chromVAR_1.4.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R chromVAR.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=chromVAR.buildbin-libdir chromVAR_1.4.1.tar.gz' >>>>>>> * installing *source* package ‘chromVAR’ ... ** libs clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c pwm_similarity.cpp -o pwm_similarity.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c utils.cpp -o utils.o clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o chromVAR.so RcppExports.o pwm_similarity.o utils.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.8-bioc/meat/chromVAR.buildbin-libdir/chromVAR/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (chromVAR) >>>>>>> >>>>>>> FIXING LINKS FOR chromVAR.buildbin-libdir/chromVAR/libs//chromVAR.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "chromVAR.buildbin-libdir/chromVAR/libs//chromVAR.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "chromVAR.buildbin-libdir/chromVAR/libs//chromVAR.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "chromVAR.buildbin-libdir/chromVAR/libs//chromVAR.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "chromVAR.buildbin-libdir/chromVAR/libs//chromVAR.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "chromVAR.buildbin-libdir/chromVAR/libs//chromVAR.so" install_name_tool -change "/usr/local/gfortran/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "chromVAR.buildbin-libdir/chromVAR/libs//chromVAR.so" install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "chromVAR.buildbin-libdir/chromVAR/libs//chromVAR.so"