Sarah Munro
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/erccdashboard |
| Branch: RELEASE_3_8 |
| Last Commit: 503a11a |
| Last Changed Date: 2019-01-04 13:31:02 -0400 (Fri, 04 Jan 2019) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:24:13 -0400 (Sat, 13 Apr 2019).
| Package 485/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| erccdashboard 1.16.1 Sarah Munro
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: erccdashboard |
| Version: 1.16.1 |
| Command: C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:erccdashboard.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings erccdashboard_1.16.1.tar.gz |
| StartedAt: 2019-04-13 02:06:25 -0400 (Sat, 13 Apr 2019) |
| EndedAt: 2019-04-13 02:08:41 -0400 (Sat, 13 Apr 2019) |
| EllapsedTime: 136.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: erccdashboard.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:erccdashboard.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings erccdashboard_1.16.1.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.8-bioc/meat/erccdashboard.Rcheck'
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'erccdashboard/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'erccdashboard' version '1.16.1'
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'erccdashboard' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
dynRangePlot: no visible binding for global variable 'value'
dynRangePlot: no visible binding for global variable 'Rep'
saveERCCPlots: no visible global function definition for 'par'
testDECount: no visible binding for global variable 'Atrend'
testDECount: no visible binding for global variable 'Dispersion'
testDECount: no visible binding for global variable 'Ratio'
Undefined global functions or variables:
Atrend Dispersion Ratio Rep par value
Consider adding
importFrom("graphics", "par")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
estLODR 5.19 0.05 5.23
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
estLODR 5.86 0.05 5.9
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'C:/Users/biocbuild/bbs-3.8-bioc/meat/erccdashboard.Rcheck/00check.log'
for details.
erccdashboard.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/erccdashboard_1.16.1.tar.gz && rm -rf erccdashboard.buildbin-libdir && mkdir erccdashboard.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=erccdashboard.buildbin-libdir erccdashboard_1.16.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL erccdashboard_1.16.1.zip && rm erccdashboard_1.16.1.tar.gz erccdashboard_1.16.1.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 1125k 100 1125k 0 0 13.3M 0 --:--:-- --:--:-- --:--:-- 13.9M
install for i386
* installing *source* package 'erccdashboard' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'erccdashboard'
finding HTML links ... done
ERCC html
ERCCDef html
ERCCMix1and2 html
MET.CTL.countDat html
MET.CTL.totalReads html
SEQC.Example html
UHRR.HBRR.arrayDat html
UHRR.HBRR.countDat html
UHRR.HBRR.totalReads html
annotLODR html
dynRangePlot html
erccROC html
estLODR html
est_r_m html
geneExprTest html
initDat html
maSignal html
runDashboard html
saveERCCPlots html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'erccdashboard' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'erccdashboard' as erccdashboard_1.16.1.zip
* DONE (erccdashboard)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'erccdashboard' successfully unpacked and MD5 sums checked
In R CMD INSTALL
|
erccdashboard.Rcheck/examples_i386/erccdashboard-Ex.timings
|
erccdashboard.Rcheck/examples_x64/erccdashboard-Ex.timings
|