Greg Finak
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/flowMerge |
| Branch: RELEASE_3_8 |
| Last Commit: e08748c |
| Last Changed Date: 2019-01-04 13:32:42 -0400 (Fri, 04 Jan 2019) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:20:59 -0400 (Sat, 13 Apr 2019).
| Package 539/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| flowMerge 2.30.1 Greg Finak
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: flowMerge |
| Version: 2.30.1 |
| Command: C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:flowMerge.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings flowMerge_2.30.1.tar.gz |
| StartedAt: 2019-04-13 02:17:33 -0400 (Sat, 13 Apr 2019) |
| EndedAt: 2019-04-13 02:20:15 -0400 (Sat, 13 Apr 2019) |
| EllapsedTime: 162.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: flowMerge.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:flowMerge.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings flowMerge_2.30.1.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.8-bioc/meat/flowMerge.Rcheck'
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'flowMerge/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowMerge' version '2.30.1'
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
NOTE
Packages which this enhances but not available for checking:
'doMC' 'multicore'
Depends: includes the non-default packages:
'graph' 'feature' 'flowClust' 'Rgraphviz' 'foreach' 'snow'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'flowMerge' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
'foreach' 'snow'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.compMD: no visible global function definition for 'mahalanobis'
initPFlowMerge: no visible global function definition for
'clusterEvalQ'
mergeClusters: no visible global function definition for '%dopar%'
mergeClusters: no visible global function definition for 'foreach'
mergeClusters: no visible global function definition for '%do%'
pFlowClust : <anonymous>: no visible global function definition for
'clusterMap'
pFlowClust: no visible global function definition for 'clusterMap'
ptree : <anonymous>: no visible global function definition for 'rgb'
ptree: no visible global function definition for 'subGraph'
ptree : <anonymous>: no visible global function definition for
'nodeDataDefaults<-'
ptree : <anonymous>: no visible global function definition for
'nodeData<-'
ptree : <anonymous>: no visible global function definition for
'subGraph'
ptree : <anonymous>: no visible global function definition for
'nodeRenderInfo<-'
flagOutliers,flowMerge: no visible global function definition for 'qf'
Undefined global functions or variables:
%do% %dopar% clusterEvalQ clusterMap foreach mahalanobis nodeData<-
nodeDataDefaults<- nodeRenderInfo<- qf rgb subGraph
Consider adding
importFrom("grDevices", "rgb")
importFrom("stats", "mahalanobis", "qf")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
'C:/Users/biocbuild/bbs-3.8-bioc/meat/flowMerge.Rcheck/00check.log'
for details.
flowMerge.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/flowMerge_2.30.1.tar.gz && rm -rf flowMerge.buildbin-libdir && mkdir flowMerge.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowMerge.buildbin-libdir flowMerge_2.30.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL flowMerge_2.30.1.zip && rm flowMerge_2.30.1.tar.gz flowMerge_2.30.1.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 398k 100 398k 0 0 13.3M 0 --:--:-- --:--:-- --:--:-- 14.9M
install for i386
* installing *source* package 'flowMerge' ...
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'flowMerge'
finding HTML links ... done
NENT html
checkForRemoteErrors html
fitPiecewiseLinreg-methods html
fitPiecewiseLinreg html
flagOutliers-methods html
flagOutliers html
flowClust.res html
flowMerge-class html
finding level-2 HTML links ... done
flowMerge-internal html
flowMerge-package html
flowObj-class html
flowObj html
initPFlowMerge html
map html
merge-methods html
merge html
mergeClusters html
mergeClusters2 html
pFlowClust html
pFlowMerge html
plot-methods html
ptree html
show-methods html
split-methods html
summary-methods html
updateU html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'flowMerge' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowMerge' as flowMerge_2.30.1.zip
* DONE (flowMerge)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'flowMerge' successfully unpacked and MD5 sums checked
In R CMD INSTALL
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flowMerge.Rcheck/examples_i386/flowMerge-Ex.timings
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flowMerge.Rcheck/examples_x64/flowMerge-Ex.timings
|