Package: flowcatchR

Version: 1.16.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:flowcatchR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings flowcatchR_1.16.0.tar.gz

StartedAt: 2019-04-15 23:56:50 -0400 (Mon, 15 Apr 2019)

EndedAt: 2019-04-15 23:58:07 -0400 (Mon, 15 Apr 2019)

EllapsedTime: 77.7 seconds

RetCode: 0

Status:  OK

CheckDir: flowcatchR.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:flowcatchR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings flowcatchR_1.16.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.8-bioc/meat/flowcatchR.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘flowcatchR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘flowcatchR’ version ‘1.16.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘flowcatchR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to ‘EBImage’ which was already attached by Depends.
  Please remove these calls from your code.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.8-bioc/meat/flowcatchR.Rcheck/00check.log’
for details.

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL flowcatchR
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’
* installing *source* package ‘flowcatchR’ ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (flowcatchR)

name	user	system	elapsed
Frames	0.610	0.153	0.766
add.contours	0.002	0.001	0.003
channel.Frames	0.338	0.109	0.449
crop.Frames	0.393	0.072	0.467
export.Frames	0.002	0.002	0.003
export.particles	0.001	0.001	0.002
inspect.Frames	0.001	0.001	0.002
kinematics	0.411	0.035	0.448
length.Frames	0.079	0.003	0.083
link.particles	0.203	0.009	0.213
matchTrajToParticles	0.405	0.013	0.420
normalizeFrames	2.582	1.930	4.540
particles	0.002	0.001	0.002
penaltyFunctionGenerator	0.000	0.000	0.001
plot.TrajectorySet	0.274	0.018	0.293
plot2D.TrajectorySet	0.420	0.013	0.437
preprocess.Frames	0.858	0.345	1.205
read.Frames	0.000	0.000	0.001
read.particles	0	0	0
rotate.Frames	0.337	0.095	0.434
select.Frames	1.861	1.229	3.102
select.particles	0.035	0.002	0.037
shinyFlow	0	0	0
show-Frames-method	0.094	0.044	0.139
show-KinematicsFeatures-method	0.244	0.015	0.261
show-KinematicsFeaturesSet-method	0.253	0.004	0.259
show-LinkedParticleSet-method	0.192	0.006	0.199
show-ParticleSet-method	0.009	0.002	0.011
show-TrajectorySet-method	0.249	0.013	0.261
snap	0	0	0
trajectories	0.252	0.001	0.255