Jennifer Tom
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/genotypeeval |
| Branch: RELEASE_3_8 |
| Last Commit: 1a09286 |
| Last Changed Date: 2018-10-30 11:41:58 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:25:42 -0400 (Sat, 13 Apr 2019).
| Package 633/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| genotypeeval 1.14.0 Jennifer Tom
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: genotypeeval |
| Version: 1.14.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/genotypeeval_1.14.0.tar.gz && rm -rf genotypeeval.buildbin-libdir && mkdir genotypeeval.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=genotypeeval.buildbin-libdir genotypeeval_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL genotypeeval_1.14.0.zip && rm genotypeeval_1.14.0.tar.gz genotypeeval_1.14.0.zip |
| StartedAt: 2019-04-12 20:03:17 -0400 (Fri, 12 Apr 2019) |
| EndedAt: 2019-04-12 20:04:35 -0400 (Fri, 12 Apr 2019) |
| EllapsedTime: 78.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/genotypeeval_1.14.0.tar.gz && rm -rf genotypeeval.buildbin-libdir && mkdir genotypeeval.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=genotypeeval.buildbin-libdir genotypeeval_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL genotypeeval_1.14.0.zip && rm genotypeeval_1.14.0.tar.gz genotypeeval_1.14.0.zip
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install for i386
* installing *source* package 'genotypeeval' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'genotypeeval'
finding HTML links ... done
GoldData-class html
GoldDataFromGRanges html
GoldDataParam-class html
GoldDataParam html
ReadGoldData html
ReadVCFData html
ReadVCFDataChunk html
VCFData-class html
VCFEvaluate html
VCFQAParam-class html
VCFQAParam html
VCFQAReport-class html
XHeterozygosity html
admixture html
callbyChrPlot html
calltypePlot html
chunkData html
computeTiTv html
didSamplePass html
didSamplePassOverall html
genotypeQualityPlot html
getCoefs html
getDescriptors html
getName html
getPlots html
getResults html
getVR html
goldCompare html
hetGap html
hetsMasked html
homrefPlot html
meanGQ html
myf html
numberCalls html
numberOfHets html
numberOfHomRefs html
numberOfHomVars html
percentHets html
percentInTarget html
rareCompare html
readDepth html
readVcfGold html
readdepthPlot html
reformatData html
titv html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'genotypeeval' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'genotypeeval' as genotypeeval_1.14.0.zip
* DONE (genotypeeval)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'genotypeeval' successfully unpacked and MD5 sums checked
In R CMD INSTALL