Alex Sanchez
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/goProfiles |
| Branch: RELEASE_3_8 |
| Last Commit: 9306d2f |
| Last Changed Date: 2018-10-30 11:41:44 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:20:42 -0400 (Sat, 13 Apr 2019).
| Package 664/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| goProfiles 1.44.0 Alex Sanchez
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: goProfiles |
| Version: 1.44.0 |
| Command: C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:goProfiles.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings goProfiles_1.44.0.tar.gz |
| StartedAt: 2019-04-13 02:47:06 -0400 (Sat, 13 Apr 2019) |
| EndedAt: 2019-04-13 02:52:06 -0400 (Sat, 13 Apr 2019) |
| EllapsedTime: 300.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: goProfiles.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:goProfiles.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings goProfiles_1.44.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.8-bioc/meat/goProfiles.Rcheck'
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'goProfiles/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'goProfiles' version '1.44.0'
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'goProfiles' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
compareGeneLists 16.26 0.23 16.50
equivalentGOProfiles 12.31 0.17 12.88
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
compareGeneLists 22.09 0.30 22.40
equivalentGOProfiles 16.70 0.12 16.83
fisherGOProfiles 8.05 0.11 8.16
mergeProfilesLists 7.39 0.05 7.43
printProfiles 5.61 0.06 5.67
plotProfiles 4.97 0.04 5.02
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
goProfiles.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/goProfiles_1.44.0.tar.gz && rm -rf goProfiles.buildbin-libdir && mkdir goProfiles.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=goProfiles.buildbin-libdir goProfiles_1.44.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL goProfiles_1.44.0.zip && rm goProfiles_1.44.0.tar.gz goProfiles_1.44.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 290k 100 290k 0 0 8050k 0 --:--:-- --:--:-- --:--:-- 9063k
install for i386
* installing *source* package 'goProfiles' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'goProfiles'
finding HTML links ... done
CD4ids html
GOTermsList html
basicProfile html
clustKidneyMF2 html
compSummary html
compareGOProfiles html
compareGeneLists html
compareProfilesLists html
contractedProfile html
conversionFunctions html
drosophila html
equivClust html
equivClust2pdf html
equivSummary html
equivalentGOProfiles html
expandedLevel html
expandedProfile html
fisherGOProfiles html
fitGOProfile html
goProfiles-package html
hugoIds html
iterEquivClust html
kidneyGeneLists html
mergeProfilesLists html
ngenes html
omimIds html
plotProfiles html
printProfiles html
prostateIds html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'goProfiles' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'goProfiles' as goProfiles_1.44.0.zip
* DONE (goProfiles)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'goProfiles' successfully unpacked and MD5 sums checked
In R CMD INSTALL
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goProfiles.Rcheck/examples_i386/goProfiles-Ex.timings
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goProfiles.Rcheck/examples_x64/goProfiles-Ex.timings
|