Sean Davis
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/methylumi |
| Branch: RELEASE_3_8 |
| Last Commit: f7609e8 |
| Last Changed Date: 2018-10-30 11:41:45 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:20:58 -0400 (Sat, 13 Apr 2019).
| Package 944/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| methylumi 2.28.0 Sean Davis
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: methylumi |
| Version: 2.28.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/methylumi_2.28.0.tar.gz && rm -rf methylumi.buildbin-libdir && mkdir methylumi.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=methylumi.buildbin-libdir methylumi_2.28.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL methylumi_2.28.0.zip && rm methylumi_2.28.0.tar.gz methylumi_2.28.0.zip |
| StartedAt: 2019-04-12 20:31:40 -0400 (Fri, 12 Apr 2019) |
| EndedAt: 2019-04-12 20:33:13 -0400 (Fri, 12 Apr 2019) |
| EllapsedTime: 93.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/methylumi_2.28.0.tar.gz && rm -rf methylumi.buildbin-libdir && mkdir methylumi.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=methylumi.buildbin-libdir methylumi_2.28.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL methylumi_2.28.0.zip && rm methylumi_2.28.0.tar.gz methylumi_2.28.0.zip
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install for i386
* installing *source* package 'methylumi' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'methylumi'
finding HTML links ... done
CpGs html
MethyLumi-class html
finding level-2 HTML links ... done
MethyLumiM-class html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpqMlYtG/R.INSTALL25903b9f66ac/methylumi/man/MethyLumiM-class.Rd:41: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpqMlYtG/R.INSTALL25903b9f66ac/methylumi/man/MethyLumiM-class.Rd:41: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpqMlYtG/R.INSTALL25903b9f66ac/methylumi/man/MethyLumiM-class.Rd:53: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpqMlYtG/R.INSTALL25903b9f66ac/methylumi/man/MethyLumiM-class.Rd:54: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpqMlYtG/R.INSTALL25903b9f66ac/methylumi/man/MethyLumiM-class.Rd:55: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpqMlYtG/R.INSTALL25903b9f66ac/methylumi/man/MethyLumiM-class.Rd:56: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpqMlYtG/R.INSTALL25903b9f66ac/methylumi/man/MethyLumiM-class.Rd:57: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpqMlYtG/R.INSTALL25903b9f66ac/methylumi/man/MethyLumiM-class.Rd:58: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpqMlYtG/R.INSTALL25903b9f66ac/methylumi/man/MethyLumiM-class.Rd:70: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
MethyLumiQC-class html
MethyLumiSet-class html
estimateM html
extractBarcodeAndPosition html
featureFilter html
generics html
getAssayDataNameSubstitutions html
methylData-class html
methylumIDAT html
methylumi-package html
methylumiGenerics html
methylumiR html
mldat html
normalizeMethyLumiSet html
plotSampleIntensities html
qcplot html
stripBeadExtras html
varFilter html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'methylumi' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'methylumi' as methylumi_2.28.0.zip
* DONE (methylumi)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'methylumi' successfully unpacked and MD5 sums checked
In R CMD INSTALL